Comamonas sediminis: ACQYWY_02750
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Entry
ACQYWY_02750 CDS
T11250
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
csen Comamonas sediminis
Pathway
csen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACQYWY_02750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csen03019
]
ACQYWY_02750
Enzymes [BR:
csen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACQYWY_02750
Messenger RNA biogenesis [BR:
csen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACQYWY_02750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XTV01397
LinkDB
All DBs
Position
complement(601210..602988)
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AA seq
592 aa
AA seq
DB search
MNFEELNLAPAIVQAVREQGYDTPTPIQAQAIPLVLQGSDLLAGAQTGTGKTAAFTLPML
QRLTESQGSLNKWGNKAIRALILAPTRELAAQVEENVRLYAAHLDIKSTVIFGGVGMNPQ
IDRIKKGVDVLVATPGRLLDLQQQGFLDLSTVEILVLDEADRMLDMGFIHDVKKVLALVP
KDKQSLLFSATFSDEIRELANGLLKNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLH
IVQENNWSQVLVFTRTKFGANNVAEYLSKNGVSAMALHGNKSQSARTQALEGFKSGDLRA
LVATDIAARGIDIDELPNVVNYEIPNVSEDYVHRIGRTGRAGREGNAVSLVCMDEEGFMM
DIERFTKQDIPVQVLEGFGPEEGEKAEPIAMGRQTIWGGAGKAPGRDVMQAAAKAARQEM
MERVRTNKVARGPGGGNAGGGQRGGNAKRGPGPRGERAEGGADFGGEGMDQARREQRPPR
RDGRQGPRHPSGEARGPQRQSQGPRQGGAGAARGPRQDSERQPRADAHLGTQFGGTVDGR
DHRRSGAAQPDPMRTSVDSMAERGRRGGFGGGNRNGGGGGAGRGGRNHSFSR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaagaactgaatctggcacctgccattgtgcaggctgtgcgcgaacaaggc
tacgacacgcctactcccatccaagcccaggctatcccgctggtgctgcaaggcagcgat
ctgctggccggcgcacaaaccggcaccggcaaaacggccgccttcacgctgccgatgctg
cagcgcctgaccgagtcccaaggcagcctcaacaaatggggcaacaaggccatccgcgca
ctgatcctggcccctacccgcgaactggccgcccaggtggaagaaaatgtgcgcctctac
gctgcacacctggacatcaagtccactgtcatctttggtggcgttggcatgaacccccag
atcgaccgcatcaaaaagggtgtggatgtgctggtggccacacctggccgcttgctcgat
ctgcagcaacaaggctttctggacctgtccacggtcgagatcctggtgctcgacgaagcc
gaccgcatgctggacatgggcttcatccacgacgtgaagaaggtgctggccctggtgccc
aaggacaagcaaagcctgctgttctccgccaccttcagcgatgagatccgcgagctggcc
aacggccttctgaagaatccccagtccatccaggtgacgccgcgcaacaccacggtgcag
cgcatcaagcaggtgatccacccggtgggccgcggcaagaaaaagcaggtgctgctgcac
atcgtgcaggagaacaactggagccaggtgctggtcttcacccgcaccaagttcggcgcc
aacaacgtggccgaatacctcagcaagaatggcgtctcggccatggccttgcacggcaac
aagagccaaagcgcccgcacccaggcgttggaaggcttcaagtccggcgacctgcgtgcg
ctggtggccaccgatatcgcagcgcgcggtatcgacatcgacgagttgcccaacgtggtc
aactacgaaatccccaatgtctcggaagactacgtgcaccgcattggccgcaccggccgc
gcgggccgcgaaggcaacgccgtgagcctggtgtgcatggatgaagaaggcttcatgatg
gacatcgagcgcttcacgaagcaggacatccctgtgcaggtgctcgaaggctttggccct
gaagaaggcgaaaaggccgagcccatcgccatgggccgccagacgatctggggcggcgcg
ggcaaggcccctggccgtgatgtgatgcaggcagcggccaaggcagcgcgccaggaaatg
atggaacgcgtgcgtaccaacaaggtggcgcgcggccccggcggcggtaacgcaggtggt
ggccagcgcggcggcaatgccaagcgcggccccggcccacgcggtgaacgcgccgaaggt
ggtgctgattttggcggcgaaggcatggaccaggcacgccgcgagcagcgcccaccacgc
cgcgacggccgccaaggcccacgccacccatcgggtgaggcacgcggcccacaacgccag
tcacaaggcccgcgccaaggcggcgctggtgctgcccgtggcccccgccaggacagcgaa
cgccagccccgcgctgatgcccacctgggcacgcagtttggcggcacggtcgatggccgt
gatcaccgccgcagcggcgcggcacagcccgatccgatgcgcaccagcgtggacagcatg
gccgaacgcggccgccgtggcggctttggcggcggcaaccgcaatggcggcggcggtggt
gctggccgaggtggccgcaaccactcgttctcgcgataa
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