Comamonas sediminis: ACQYWY_02790
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Entry
ACQYWY_02790 CDS
T11250
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
csen Comamonas sediminis
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csen03009
]
ACQYWY_02790 (rlmD)
Enzymes [BR:
csen01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACQYWY_02790 (rlmD)
Ribosome biogenesis [BR:
csen03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACQYWY_02790 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
TRAM
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
XTV01405
LinkDB
All DBs
Position
618932..620473
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AA seq
513 aa
AA seq
DB search
MSEAQTPQTISESPDAAEAAQFPADALKIVSMDMDAQGVARRADGKVVFVDGALPTEWVS
AKTRRKKNNWEQADLLQIHRESSQRVRPGCPNFGLHAGACGGCKMQHLHVGAQIATKQRV
LEDNLWHLGKVVPETVMRPIEGPSWGYRFRSRLSVRYVAKKGKVLVGFHERKSRYIADME
TCKILPPHVDALLMPMRALIGSLDARETCPQIEVACGDHVTALVLRHLEPLSDADMQRLR
DFAAAHNVQWWLQPKGPDTVHLMDGIGEQLSYALPDFGITMPFKPTDFTQVNPHINQVLV
TRSLRLLDAKKTERVIDWFCGLGNFTLPIGTMAGEVLGIEGSETLVQRSHENYAANNASR
PAGNALAPTRFVARNLFEMTPEMLIADGQADKWLVDPPREGAFALSKALADIHKARHQVP
DTAPLPDSARDWTPPKRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVES
MAVFEWDGHAPSVKTETEMADAEAPAAAEGAAA
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagcgcagaccccacagaccatttccgaatcccccgatgccgccgaggcggcc
cagttccccgcagatgccttgaagatcgtgtccatggacatggatgctcagggtgtcgcg
cgccgtgccgacggcaaggtcgtctttgttgacggtgccttgcccaccgaatgggtgagc
gccaagacccggcgcaagaaaaacaactgggagcaggccgatctgctgcagatccaccgc
gagtcgtcgcagcgtgtgcggcccggctgccccaactttggcttgcatgccggcgcctgc
ggtggctgcaagatgcagcatctgcatgtcggcgcccagattgcgaccaagcagcgcgtg
ctggaggacaacctctggcacctgggcaaggtggtgcccgagacggtgatgcgccccatt
gaaggccccagctggggctaccgcttccgctcgcgcctgtcggtgcgctatgtcgccaag
aagggcaaggtgctggtgggtttccatgagcgcaagagccgctacatcgccgacatggaa
acctgcaagatcctgcctccgcatgtcgatgccttgctgatgccgatgcgcgcgctgatc
ggcagccttgatgcccgcgaaacctgcccgcagatcgaagtggcctgcggcgaccatgtc
accgcgttggtgctgcgccatctggagccgctgagcgacgccgacatgcagcgcctgcgc
gattttgccgcagcccataacgtgcaatggtggctgcagcccaaggggccggacaccgtg
cacctgatggacggcatcggcgagcagctgtcctatgcactgcccgatttcggcatcacg
atgccgttcaagcccaccgacttcacccaggtcaacccccacatcaaccaggtgctggtg
acgcgctcgctgcgcctgctggatgccaagaagaccgagcgcgtgatcgactggttctgc
ggtctgggcaacttcaccctgcccatcggcacgatggccggtgaggtgctgggcatcgaa
ggctcggagaccctggtgcagcgctcgcacgagaactatgccgccaacaatgccagccgc
cccgccggcaatgcgctggcgcccacgcgctttgtcgctcgcaacctgttcgagatgacg
ccggagatgctgatcgccgatggccaggccgacaaatggctggtcgatcctccacgtgaa
ggcgcattcgcactgtccaaggcgctggctgatatccacaaggcccgccaccaggtgccc
gacacggcgccgctgcccgacagcgccagggactggacgccgcccaagcgcattgtgtat
gtgagctgcaacccggcgaccctggcacgcgatgccggtctgctggtgcaccaggccggc
taccgctgcgtggccgccggtgtggtcaacatgttcccgcatacggcccacgtcgagagc
atggcggtgtttgagtgggatggccatgcgccgtcggtcaagaccgagaccgagatggcc
gatgcagaggccccggctgctgcggaaggtgcagccgcctaa
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