Comamonas sediminis: ACQYWY_04215
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Entry
ACQYWY_04215 CDS
T11250
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
csen Comamonas sediminis
Pathway
csen03030
DNA replication
csen03430
Mismatch repair
csen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACQYWY_04215 (dnaE)
03430 Mismatch repair
ACQYWY_04215 (dnaE)
03440 Homologous recombination
ACQYWY_04215 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csen03032
]
ACQYWY_04215 (dnaE)
03400 DNA repair and recombination proteins [BR:
csen03400
]
ACQYWY_04215 (dnaE)
Enzymes [BR:
csen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACQYWY_04215 (dnaE)
DNA replication proteins [BR:
csen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACQYWY_04215 (dnaE)
DNA repair and recombination proteins [BR:
csen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACQYWY_04215 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
XTV01669
LinkDB
All DBs
Position
complement(940964..944509)
Genome browser
AA seq
1181 aa
AA seq
DB search
MFVHLRIHSEFSIIDSTNRVGDLIKFAAGDSQPAMALTDLNSLFGAIKFYKAGRGAGVKP
LLGAELTLEPEVAGGPLSRIIVLIQSQQGYLNLSELLARIWMADTIKAQPQCTWAWLEEL
SDGLILLSGAQAGPVGQALMRGDEKTARSVALRLAGLFPHRFYIELQRAGRADDESHVAA
AVALAAHLKLPVVATHPVQFTKPADFESHEARVCIAEGETLGNKKRVKRFTRDQYLKSAA
EMEALFADLPSAIANTAEIARRCSVTLQLGKYFLPDFPTPNGMPIDAYFRQASFEGLEDR
LKLLFPNEAKREAERPKYVERLEFELGIILKMGFPGYFLIVADFINWAKNNGCPVGPGRG
SGAGSLVAYVLKITDLDPIHYNLLFERFLNPERVSMPDFDVDFCQANRDRVIDYVKDLYG
RNAVSQIATFGTMAARAAIRDVGRALDMSYGFCDGISKLIPNKPGLHVTLKYPPNPPKDG
DKYTYAIKEEPILAERIEKEEDVKTLIEMAQKLEGMTRNIGMHAGGVVIAPGKLTDFCPL
YQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIIKRHKGQENFKFEEIP
LDDARTYQLFSAGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNALYRPGPMDLIPSFV
ARKHGKEVVEYPHPLVEKVLSETYGIMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKKV
EEMVQHRATFREGASKIGIDEAKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVH
YTAEFYCGNMTVEMDNTDKLKVLYEDALKMGMTFEMPDVNRGHHRFEPVTDKVIRYGLGA
IKGTGQAAIEAIVAAREGKGTGPQGDTKGPFKSLFDFCLRVDRSKLNKRTVEALIKGGAF
DSIQLNRRALIESVDVAFEFAATTHANANQGGLFDMMGDDAVGSSTQEPPLADVLPWGIK
ERLVQEKTAIGFYLSGHLFDEVELEVRQFVRTPISQLKDSREPQTVAGIISDMRVINGQR
GKLVLFKIDDKTGVIEGSLDEATWNRHKEQLKDDEFVILSARIGQDHFSGGLRAKAQHVW
GLADARARFGRYLLVNTDRHQPDVARLIQEFPAVEEHTDEGVLRHGLKIRLGVVCGQGET
RAGVELNLGDAARFFPSDQAMAAWSQEAGHEAIKIVYESTV
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtacaccttcgcatccattccgagttttccatcatcgacagcaccaatcgcgta
ggcgatctgatcaagtttgctgcgggtgatagccagccggcgatggcgctgaccgacctg
aacagcctgttcggcgccatcaagttttacaaagcgggccggggtgcaggtgtcaaaccc
cttctgggcgccgagctgaccctggagcccgaggtggcaggcgggccgctgtcgcgcatc
atcgtgctgatccagagccagcagggctacctgaacctgtcggaactgctggcgcggatc
tggatggccgataccatcaaagcgcagccgcagtgcacctgggcctggctggaagagctg
tcggacggcctgatcctgctgtcgggcgcccaggccggccccgtcggccaggcgctgatg
cgcggggacgaaaagaccgcgcgcagcgtggcactgcgcttggcgggcctgttcccgcac
cgtttctacatcgagctgcagcgcgccggccgcgctgacgatgaaagccatgtagccgca
gccgtggcgctggcagcgcacctcaagctgccggtcgtggccacgcatccggtgcagttc
accaagcctgccgattttgaatcgcacgaggcccgtgtctgtattgccgagggcgagacc
ctgggcaacaagaagcgcgtcaagcgctttacccgcgaccagtacctgaagtctgctgcc
gagatggaggccctgttcgccgacctgcccagcgccatcgccaatacggccgagatcgcc
cgccgctgcagcgtcaccctgcagctgggcaagtattttctgcccgatttccccacgccc
aatggcatgccgatcgacgcgtatttccgccaggcctcgttcgaggggctggaggaccgc
ctgaaactgctgtttccgaacgaggccaagcgcgaggccgagcggcccaagtatgtcgag
cggctggagttcgagctgggcatcatcttgaagatgggtttccccggctacttcctgatc
gtggcggacttcatcaactgggccaagaacaatggctgcccggtgggaccaggccgggga
tcgggggccggttcgctggtggcctatgtgctgaaaatcaccgatctggacccgattcac
tacaacctgctgttcgagcgcttcctgaacccagagcgggtctcgatgcccgactttgac
gtggacttctgccaggccaaccgcgaccgggtgatcgactatgtgaaggacctgtacggc
cgcaatgcagtgagccagattgcgaccttcggcacgatggccgcgcgcgcggcgatccgc
gacgtgggccgtgcgctggacatgagctatggcttttgcgatggcatctccaagctgatc
ccgaacaagccgggcctgcatgtgaccttgaagtacccgcccaatcctccgaaggacggc
gacaagtacacctatgcgatcaaggaagagccgatcctggccgagcgcatcgagaaggaa
gaggacgtcaagaccctgatcgagatggcgcagaagctcgaaggcatgacccgcaacatc
ggcatgcacgccggtggtgtggtgatcgccccgggcaagctgaccgatttttgcccgctc
taccagcagccgggcagcacctcggcggtggccatgtatgacaaggacgacgtcgaggcc
gtgggcctggtcaagttcgacttcctgggcctggcgacgttgacgattctggagatcgcg
cgcgagttcatcatcaagcgccacaaggggcaggaaaacttcaagttcgaagagatcccg
ctcgacgacgcccgcacctaccagctgttttcggccggcaagaccgaagcggtgttccag
tttgaatcgcgcggcatgcagcagatgctgaaggaggccaagcccagccgcctggaagac
ttgattgcgctgaatgcgctctaccgtccgggtccgatggacctgatccccagctttgtg
gcgcgcaagcacggcaaggaagtggtggagtatccgcatccgctggtcgagaaggtgctg
tccgagacctacggcatcatggtctaccaggagcaggtgatgcagacggcccaggtgctg
ggcggctacagcctgggcggcgccgacttgctgcgtcgcgcgatgggcaagaaaaaggtc
gaggagatggtgcagcaccgcgcgaccttccgcgaaggggcctccaagatcggcatcgac
gaggccaaggccgacgaagtgttcgacctgatggagaagtttgcaggctacggcttcaac
aagtcgcacgccgctgcctactcgctgctggcctaccacaccggttggctcaaggtccac
tacacggcagagttctactgcggcaatatgaccgtggaaatggacaacaccgacaagctc
aaggtgctgtacgaagacgcgctgaagatgggcatgaccttcgagatgcccgatgtgaac
cggggccaccaccgcttcgagccggtgaccgacaaggtgatccgctatggcctgggcgcc
atcaagggcaccggccaggccgccatcgaggccattgtggcggcgcgcgaaggcaagggc
acgggcccccagggcgataccaaggggccgttcaagagcctgttcgacttctgcctgcgc
gtggaccgcagcaagctcaacaagcgcacggtcgaagcgctgatcaagggcggcgccttt
gacagcatccagctcaaccgccgcgcgctgatcgaatcggtcgatgtggccttcgaattt
gccgccaccacccatgccaatgctaaccagggcggcctgtttgacatgatgggtgatgac
gccgtgggatcgagtacgcaggagccgccgctggccgatgtgctgccctggggcatcaag
gagcggctggtgcaggagaagaccgccatcggcttttacctgtcgggccatttgtttgac
gaggtcgagctggaggtgcgccagttcgtgcgcacgccgatctcccagctcaaggacagc
cgcgagccccagacggtggcgggcatcatcagcgacatgcgcgtcatcaacggccagcgc
ggcaagctggtgctgttcaagatcgacgacaaaaccggtgtcattgaaggatcgctggac
gaggccacctggaaccgccacaaggagcagctcaaggacgatgaattcgtcattctgagc
gcccgcatcggccaggaccatttcagcggcgggctgcgcgccaaggcccagcatgtctgg
ggtctggccgatgcgcgcgcccgttttggccgctacctgctggtcaacaccgaccgccac
cagcccgatgttgcgcggctgattcaggagtttcccgcagtcgaggagcacaccgacgag
ggcgtgctgcgccacggcctcaagatccgcctgggcgtggtctgcggccagggcgagacc
cgggcgggtgtggagctcaatctgggcgatgcggcgcgcttcttccccagcgaccaggcg
atggctgcctggtcccaggaagcaggccacgaagccatcaaaatcgtttacgaaagcact
gtctag
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integrated database retrieval system
