Comamonas sediminis: ACQYWY_08285
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Entry
ACQYWY_08285 CDS
T11250
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
csen Comamonas sediminis
Pathway
csen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACQYWY_08285 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csen03019
]
ACQYWY_08285 (pnp)
03016 Transfer RNA biogenesis [BR:
csen03016
]
ACQYWY_08285 (pnp)
Enzymes [BR:
csen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ACQYWY_08285 (pnp)
Messenger RNA biogenesis [BR:
csen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACQYWY_08285 (pnp)
Transfer RNA biogenesis [BR:
csen03016
]
Prokaryotic type
tRNA degradation factors
ACQYWY_08285 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
KH_SLS1_2
DUF5813
aRib
Motif
Other DBs
NCBI-ProteinID:
XTV02417
LinkDB
All DBs
Position
complement(1814058..1816301)
Genome browser
AA seq
747 aa
AA seq
DB search
MSIFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKAGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFYNDVHVVIHTI
SLNPEVDADIAAMIAVSAALSISGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSLMDLV
VAGTEAAVLMVESEAQQLPEEVMLGAVVYGHEQGQIAINAIHELVREAGKPAWDWAAPAK
DEALIAKVGELGDAALRDAYQLRNKQARTLACRQAYAAVKAGLTEQGVAFDGVKVDGMLF
DIEARIVRSQILAGEPRIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVISTLGT
ERDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNKFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGATIRALTEETGTQINIEEDGTITIA
ATDGAKADEAKRRIEEITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHER
VEKVTDYLSEGQVVKVKVLETDEKGRVKLSMKALLDRPAGMPEREPREFREPRGDRGDRG
DRAPRQHREPREPRVDGAADQQQQQQQ
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtccatattcaacaaggtcaccaagactttccagtggggccagcacacggtcaccatg
gaaaccggtgaaatcgcccgccaggcttccggcgcggtgctggtcaacatcgacgacacc
gtggtgctggctacggtggtgggctccaagatcgccaaggccggtcaggactttttcccg
ctgaccgttgactacatcgagaagacctacgctgcaggcaagatccctggcagcttcttc
aagcgcgaagccaagcccagcgaactcgaaaccctgaccagccgtctgatcgaccgcccg
atccgtccgctgttccccgaaggtttctacaacgacgtgcatgtggtcatccacaccatc
tcgctgaaccctgaagtggatgccgacatcgctgcgatgatcgccgtgtccgctgcactg
tccatctcgggcattcctttcaacggccctatcggtgctgcccgcgtgggttacatcaac
ggcgaatacgtgctcaaccccggtcagacccagcgcaaggattcgctgatggatctggtg
gtggcaggcaccgaagctgctgtgctgatggtcgaatccgaagcccagcaactgcctgaa
gaagtgatgctgggcgccgtggtctatggccacgagcaaggccagatcgcgatcaacgcc
atccacgaactggtgcgcgaagccggcaagcccgcatgggactgggctgctcctgccaag
gacgaagcactgatcgccaaggtgggcgagctgggcgatgccgccctgcgcgacgcttac
cagctgcgcaacaagcaagcccgtacgctggcctgccgccaggcttacgccgctgtgaag
gctggcctgaccgagcaaggcgtggcctttgacggcgtcaaggtcgacggcatgctgttc
gacatcgaagcgcgcatcgtgcgctcgcagattctggcgggtgagccccgtatcgacggc
cgcgatacccgcaccgtgcgtcctatcgagatccgctcgtcggtgctgccacgcacccac
ggctcggccctgttcacccgtggtgaaacccaggcgctggtgatctccaccctgggcacc
gagcgcgatgcacagcgtatcgacgctctggctggcgagtttgaagaccgcttcctgttc
cactacaacatgcctccctttgccaccggcgaagtgggccgcatgggctcgaccaagcgc
cgcgaaatcggccacggccgtctggccaagcgcgcgctggccgcgtgcctgccgtcgaag
gaagagttcccctacaccatccgcgtggtgtcggaaatcaccgaatcgaacggttcctcg
tcgatggcttcggtctgcggcggctgtctgtcgatgatggacgccggcgtgccgatgaag
gcccacgtggccggtatcgccatgggtctgatcaaggaagacaacaagtttgccgtgctg
accgacatcctgggtgacgaagatcatctgggtgacatggacttcaaggtggccggtacg
accaacggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaagtggcactggcgcaagccaaggaagcgcgcatgcacatcctgggcaagatgcaa
gaagcgatgggtgaagccaaggcggaagtctcgtcgtttgcgcccaagctgtacacgatg
aagatcaaccccgagaagatccgtgatgtgatcggcaagggcggcgccaccatccgtgcg
ctgaccgaagagaccggcacccagatcaacatcgaggaagatggcaccatcaccatcgcc
gccaccgatggcgccaaggcggacgaagccaagcgccgcatcgaagagatcaccgccgaa
gtcgaaatcggcaagatctacgaaggcccgatcgtcaagatcctggaattcggtgccctg
gtgaacctgctgcccggcaaggacggtctgctgcacatcagccagatcgcccacgagcgc
gtggagaaggtgaccgactacctgagcgaaggccaggtcgtcaaggtcaaggtgctggag
acggacgaaaagggccgtgtcaagctgtcgatgaaggcgctgctggaccgtccagccggc
atgcccgagcgtgagccacgcgagttccgtgagccacgcggcgaccggggtgaccgcggc
gatcgcgcgcctcgccagcaccgcgaaccacgcgagccccgcgtggacggtgctgccgac
cagcagcaacaacaacagcaataa
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