Comamonas sediminis: ACQYWY_10225
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Entry
ACQYWY_10225 CDS
T11250
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
csen Comamonas sediminis
Pathway
csen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACQYWY_10225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csen03019
]
ACQYWY_10225
03009 Ribosome biogenesis [BR:
csen03009
]
ACQYWY_10225
Enzymes [BR:
csen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACQYWY_10225
Messenger RNA biogenesis [BR:
csen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACQYWY_10225
Ribosome biogenesis [BR:
csen03009
]
Prokaryotic type
rRNA processing factors
ACQYWY_10225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
IMUP
Motif
Other DBs
NCBI-ProteinID:
XTV02777
LinkDB
All DBs
Position
2217655..2220690
Genome browser
AA seq
1011 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQARINDVIKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGDERAELKEAMDQLDYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWGAIDGAAKSGKGAFLIYQESSLVIRAIRDYFHNDIGDILIDTDDIYEQAQ
QFMAHVMPEHAARVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAIVIDHTEALVSI
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRRDVESR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDAESSALQ
ILRIIQEESMKDNTAAVNCQVPVEVASFLLNEKRTEIQKIELKQRVSVTMVPNKALETPH
YKLERMKHDDPRLDSMEASYKLADPEEESLGFTRRSQEPTNKQTPVIKGVLPDAPAPIAE
PRPAPAARTANPQNGKPAGASAAAPAAAPVAAPQKGFFAWLKRFFGMAPEPAPAPVPAPA
AAPAADARRENRDGRNANNRGGRGDRVERGDRGDRKDGNRAARGERAEGEQRGERNGRGN
NGSADSSRSPRGGDQEGRNRRGERGDRQERSRRDDAPLNPQAGDNAAANGERQERAPRPE
RAPREPREGRRDRGERQDRRNNNGEEAAQPLNAVAPAPLNADAVIASLPSLDLDTGNQAA
PGAADADGATPERRERRSRDRYGRDRRNRGERERNGRDEQAEGDNAAADSGFGADAAPAV
PQDTDEAPRRSYFNAAPAAAPVEAPAPAVADVVPAPAPVAQAEVPVAAQEAAPVAAVAPA
VPGAPVAAAPVVAAPAPVAAEPAKAGLPAIASYSLPLDALHQIASTAGLQWINSDADKIA
AVQAAIAAEPKPVHVPRERQPVVQIDQGPLILVETRKDLTDLVLPFERETA
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgatcaacgccacgcaagctgaagagcgccgcctcgccattgttgat
ggccaaaagctgctggactacgaaatcgaaatcgaaggccgcgaacaacgcaaaggcaat
atctacaaagccgttgttacccgggtcgaaccctccctggaagcctgctttgtcgactac
ggcgaagaccgccacggctttctgcccttcaaggaaatctccaagcagtatttcgccgaa
ggcgtctcccccagccaggcccgcatcaatgatgtgatcaaggaaggccaggagctgatc
gttcaggtcgaaaaggaagaacgtggcaacaagggcgcggccctgaccaccttcatctcg
ctggccggccgctatgtggtgctgatgcccaacaacccccgtgggggcggtgtttcgcgc
cgcatcgaaggcgacgagcgcgccgagctcaaggaggcgatggaccagctggactatccc
aagggcatgtccatcatcgcgcgcaccgccggcatcggccgcagcgcacccgagctgcaa
tgggatctgaactacctgctcaagctctggggcgccatcgacggcgctgccaagtcgggc
aagggcgccttcctgatctaccaggaatcgagcctggtgatccgcgcgatccgcgactat
ttccacaatgacatcggcgacatcctgatcgacaccgatgacatttatgaacaagcccag
cagttcatggcccatgtgatgcctgagcatgctgcccgcgtcaagcgctaccgcgatgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgagtcggcctactcccgcacc
gtgaccctgccttcgggcggcgccatcgtgatcgaccacaccgaagcgctggtctccatc
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggaaaccgccacccgcacc
aacctggaagcggccgacgaagtggcccgccagatgcgcctgcgcgacctgggtggtctg
atcgtgatcgacttcatcgacatggaagagtcgaagaaccgccgcgatgtggaaagccgc
ctgcgtgacgcgctgcgccaggaccgtgcccgtgtgcaattcggcaccatcagcaagttc
ggcctgatggaaatgagccgccagcgcctcaagcctgcgctgagcgaaggtgcccacatc
aactgcccacgctgcggcggctccggccacatccgcgatgcggaaagctcggcgctgcag
atcctgcgcatcattcaggaagagtcgatgaaggacaacacggcagccgtcaactgccag
gtgccggtcgaagtcgcctccttcctgctcaacgaaaaacgtaccgaaatccagaagatc
gagctcaagcagcgcgtgtccgtcaccatggtgcccaacaaggcgctggagaccccgcac
tacaagctcgagcgcatgaagcacgacgacccccgtctggactcgatggaagcgagctac
aagctggccgaccccgaagaggaaagcctgggcttcacccgccgctcgcaagagccgacc
aacaagcaaaccccggtcatcaagggcgtgctgcccgatgcaccggcgccgattgccgag
ccacgcccggcacctgccgcccgtaccgccaacccgcaaaacggcaagccggcaggcgcc
tccgccgcagcgcccgctgcagctcctgtggccgcaccgcaaaagggcttcttcgcctgg
ctcaagcgcttcttcggcatggcccctgagcccgcaccggctcccgtgcctgcaccagca
gcagcaccggctgccgacgcccgccgtgaaaaccgcgatggccgcaacgccaacaaccgt
ggcggccgtggggaccgtgtagagcgcggcgaccgtggtgaccgcaaggacggcaaccgc
gctgcccgtggcgagcgcgccgaaggcgaacaacgcggtgagcgcaatggccgtggcaac
aatggctcggccgatagcagccgcagcccccgtggcggcgaccaggaaggccgcaaccgc
cgtggtgagcgcggtgaccgccaggagcgcagccgccgtgacgacgccccgctgaacccg
caagccggcgacaacgccgccgccaacggcgagcgccaggaacgcgcaccccgccccgag
cgcgctccccgcgagccgcgtgaaggccgccgcgaccgtggtgagcgccaggaccgccgc
aacaacaacggtgaagaggcggcccagcccctcaacgccgtcgcaccggcacccctcaac
gctgatgcggtgattgcctccctgccatcgctggacctggataccggcaaccaagccgca
ccaggcgctgctgatgcagacggcgcaacgccagaacgccgtgagcgccgctcgcgtgac
cgctatggccgcgaccgccgcaaccgtggtgagcgcgagcgcaatggccgtgacgagcag
gccgaaggcgacaacgccgccgccgactcgggctttggcgccgatgctgcccctgccgtg
ccgcaagacaccgacgaggcaccacgccgcagctacttcaacgcagcgcctgccgccgca
ccggtagaagccccagcgcccgccgtggccgatgtggtaccggctcctgcccctgtggcg
caagccgaggtaccggttgcggcccaggaagctgcacccgtggccgctgtggccccagcc
gtgcctggcgcccccgtcgcagcagcaccggtggttgcagcccctgcgccagttgctgcc
gagcccgccaaggccggtctgccagcgattgccagctacagcctgccgctggatgcactg
caccagatcgccagcaccgcaggtctgcaatggatcaactccgatgccgacaagatcgcc
gccgtgcaagcggccatcgccgccgagcccaagccggtgcatgtgccgcgtgagcgccag
cccgtggtgcagatcgaccagggcccgctgatcctcgtcgagacccgcaaggatctgacc
gacctggtcctgccctttgagcgcgaaaccgcttaa
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