Comamonas sediminis: ACQYWY_11855
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Entry
ACQYWY_11855 CDS
T11250
Name
(GenBank) ribonuclease catalytic domain-containing protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
csen Comamonas sediminis
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csen03016
]
ACQYWY_11855
Enzymes [BR:
csen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACQYWY_11855
Transfer RNA biogenesis [BR:
csen03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ACQYWY_11855
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
XTU98700
LinkDB
All DBs
Position
2582201..2584267
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AA seq
688 aa
AA seq
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MYALFDDAGKFLAGRILSEAESSAQIELDSGKRVKVKAANLLLKFDKPTPAELIAQAQTL
SDDIDPQLAWEFAPEQEFGFADLARDYFSENASITEQVAALFKLFEAPHYFRRAGKGRFK
KAPAEIVQQALAAIEKKAQLQAQIDAWAVELVNGQCPAPVQQQLYKILFRPDKNAPEYKA
VVEASRKAQLAPLALLQKAGAIDSSYQFHWQRFLFDNFPKGTGFPAVTAPLPPADLPLAT
VEAYSIDDSATTEIDDALSVQGLGSGQVIVGVHIAAPGLAIEPGSALDHLGRSRYSTVYM
PGYKVTMLPDEVVQIYTLDEGRANPAVSLYVTYDEATLEVLNKETRLERVPVVTNFRYDK
LDHIATEAWLTDPALQVEDTPQSLLDKRAELSFLYRLSRHLKAGREEVRGKPENFNRPDY
NFRLQGHGDQVPDGTETVQISVRKRGAPLDLIVAEAAIVANSSWGQLLADYGVPGIYRSQ
ASLAPGIKVRMSTKALPHAGIGVKSYVWATSPLRRYTDLVNQWQIIACARHGATAALVAP
FKPKDAELFSIISGFDAAYSAYNGYQAGMERYWTLKYLTQNHISDLTATVMKEGPAGSML
VRADELPLVFPVLGAQSLPRGAQVRVKLGEIDEITLDVTGTVLERLDDEQANQADTESPE
DEEEAVAGPIAIAVDMSDGEDAATTKTD
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcactgttcgacgacgctggcaaatttctggccggccgtatcctctccgaagct
gaaagctctgcacaaattgaactggactccggcaaacgggtcaaggtcaaggccgcgaac
ctgcttctcaaatttgacaagcccacgcctgccgagctgatcgcacaggcgcaaacccta
tcggacgacatcgacccccagctcgcctgggaatttgcgcccgagcaggagtttggcttt
gccgacctggcacgcgactacttctccgagaacgcctcgatcaccgaacaggtggccgcg
ctcttcaaactgttcgaggcaccgcactacttccgtcgcgcgggcaagggccgcttcaag
aaggcgccggccgagatcgtgcagcaagcgctggccgcgatcgagaaaaaggcccagctc
caggcgcagatcgacgcctgggcggtcgagctcgtcaatggccagtgcccggccccggtg
cagcagcagctctacaagattctgttccgccccgacaagaacgcgccggagtacaaggcg
gtcgtcgaggccagccgcaaggcgcagctggcaccgctggcgctgctgcaaaaggccggc
gctatcgattcgtcctaccagttccactggcagcgcttcctgtttgacaactttcccaag
ggcacgggctttcccgcggtcacggcgccgctgccaccggccgatttgccgctggccacg
gtggaggcctactccatcgacgattcggccacgaccgaaatcgacgatgcgctgtcggta
cagggcctgggctctggccaggtgatcgtcggcgtgcacattgccgcgcctggtctggcg
atcgagcccggctcggcgctcgaccacctgggccgcagtcgctactccaccgtctacatg
ccgggctacaaggtcacgatgctgcccgacgaagtggtgcagatctacacgctggatgaa
ggccgcgccaacccggcagtgtcgctctacgtcacctatgacgaagcaacgctggaagtg
ctgaacaaggaaacgcgcctggagcgcgtgcccgtcgtcaccaacttccgctacgacaag
ctcgaccatatcgccaccgaagcctggctgaccgatccggcgctgcaggtcgaagacacg
ccccagtccctgctggacaagcgcgccgagctgagctttctctaccgcctctcgcgccac
ctcaaggccggccgcgaagaggtgcgcggcaagcccgagaacttcaaccgccccgactac
aacttccgcctgcaaggccatggcgaccaggtgcccgacggcaccgagaccgtgcagatc
tccgtgcgcaagcgcggcgcaccgctcgatttgatcgtggcggaagcagccatcgtcgcc
aacagcagctggggccagttgctggccgactatggtgtgcccggtatctaccgcagccag
gccagtctggcaccgggcatcaaggtgcgcatgtccactaaggcgctgccgcacgcgggc
attggcgtcaagagctatgtctgggccacctcgccgctgcgccgctacaccgacctggtc
aaccagtggcaaatcatcgcctgtgcccgccacggcgccaccgctgccctggttgcaccg
ttcaagcccaaggatgcggagctgttctcgatcatcagcggctttgacgccgcctacagt
gcctacaacggctaccaggccggcatggagcgctactggaccctgaagtacctgacccag
aaccacatcagtgacctcaccgcaacagttatgaaggaaggcccggcgggcagcatgctg
gtgcgcgcagatgaactaccattagtgtttccggtgctgggtgcgcagagtctgccgcgt
ggtgcccaggtccgggtcaagctcggcgagatcgacgagatcacgctggatgtgacagga
acggtgctggagagactggacgacgaacaggccaaccaggccgacacagagtcgccagaa
gacgaggaggaggctgtggctgggcccatcgcaatcgcggtggacatgagcgacggtgag
gacgcggcgaccacaaaaaccgattaa
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