Comamonas sediminis: ACQYWY_18205
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Entry
ACQYWY_18205 CDS
T11250
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
csen Comamonas sediminis
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csen03016
]
ACQYWY_18205
Enzymes [BR:
csen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACQYWY_18205
Transfer RNA biogenesis [BR:
csen03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACQYWY_18205
Prokaryotic type
tRNA splicing ligases
ACQYWY_18205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XTU99877
LinkDB
All DBs
Position
complement(3993573..3994964)
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AA seq
463 aa
AA seq
DB search
MSNFPRLQKALSRQGIHVSFRDGIYDIHNAHAAASILLPAALPLEQKAVTQLLEFASVAD
PQGHGAVCKACATPDFHPGSIAPVGAVVATSRDFVIPAAIGTDINCGIRIMRTGLNLAQA
EAHKSSIIAKLKRAILENGRDVPVRSAGFKALFDDGPASFLEQLPELGLWRAADRDQLQR
ELAACVGLDSFQGDARYGPEALMQSREIVRPPSAAELGGGNHFLEFNVVDEIFDRHAAYE
AGLKKGDITVMIHTGSRDVGFYVGRRWMDLAKQEWPQGLKHPGHGLYGLSGHLAAEYMKA
MGVAARYAWFNRMALGEIVRQQLADIAAPDASAVIVDVPHNVVLQEGEFNVHRKGSTPAH
DGQWALIPGSMGDHSYLVKGLGHEDWLRSCSHGAGRQVRRQDTRRMKQPLVDTVWQCITL
REERLIEEAPSAYKPVGPVLQAQEQAGLIRASVRLKPWLTFKA
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaactttccccgactccaaaaagccctgtctcgccagggcatccatgtctctttc
cgagacggtatctacgacatccacaacgcgcatgcagcggcatcgatcctgctgcccgcc
gctttgcccctggagcaaaaggcagtgacccagctgcttgaatttgcctccgtggccgat
ccgcagggccacggcgctgtctgcaaggcctgtgcaacgcctgacttccacccgggcagc
attgcgccggtaggcgccgtggtcgccacatcgcgggactttgtcatacctgccgcgata
ggcaccgacatcaactgcggcatccggatcatgcgcacggggctcaacctggcccaggcc
gaggcacacaagagcagcatcattgccaagctcaagagagccatcctggagaatggccgc
gatgtgccggtgcgcagtgccggcttcaaggccttgtttgacgatggcccggccagcttt
ctggagcagctgcccgagctgggcctatggcgcgccgccgatcgcgatcaacttcagcgc
gagctggcagcctgcgtggggctcgatagcttccagggtgatgcacgctacgggcctgag
gccttgatgcaaagccgcgaaatcgtgcgtccgccctctgcagcggagctgggcggaggc
aaccattttctggagttcaatgtcgtcgacgagatcttcgaccggcatgccgcttatgaa
gcgggccttaaaaagggcgatatcaccgtgatgatccacaccggctcgcgcgatgtcggc
ttctatgtgggccgccgttggatggacctggcaaaacaagaatggccccaaggtctcaag
caccccggccatgggctctatggcttgagcggccatctggctgccgagtacatgaaggct
atgggcgtggccgcccgctacgcctggttcaaccgcatggccctgggcgaaatcgtgcgc
cagcaattggccgacattgcagcgccagatgcatcggcggtgattgtggatgtgccacac
aacgtggttctgcaagaaggagaattcaatgtgcaccgcaaaggctccacgcccgcgcat
gacggccagtgggccttgatccccggatcgatgggcgaccactcctacctggtcaaaggc
ctgggccacgaagactggctgcgctcctgcagccatggcgctggtcgccaggtgcgccgc
caggatacccgccgcatgaagcagcccctggtcgacacggtctggcaatgcatcaccttg
cgtgaggagcggctcatcgaggaagcacccagcgcctacaaaccagtggggcccgttttg
caggcccaggagcaggcaggcttgatccgcgccagcgttcgcttgaagccttggctgact
ttcaaggcttga
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