Comamonas sediminis: ACQYWY_19845
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Entry
ACQYWY_19845 CDS
T11250
Name
(GenBank) sigma-54-dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
csen Comamonas sediminis
Pathway
csen02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACQYWY_19845
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
csen02022
]
ACQYWY_19845
02035 Bacterial motility proteins [BR:
csen02035
]
ACQYWY_19845
Two-component system [BR:
csen02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
ACQYWY_19845
Bacterial motility proteins [BR:
csen02035
]
Pilus system
Twitching motility proteins
ACQYWY_19845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_50
Mg_chelatase
AAA
VpsR
PDE8A_N
AAA_16
HTH_30
Motif
Other DBs
NCBI-ProteinID:
XTV00193
LinkDB
All DBs
Position
complement(4378247..4379776)
Genome browser
AA seq
509 aa
AA seq
DB search
MSFENTTVLVVDDEPDLRTLYELTLLREGYRVFTAGSVQEARAQLQQRRFEILITDMRLP
DGLGMELLQDLRRQSRSERAIVMTAYGSADNAVAALREGAFDYLTKPVDLKQFRQVVASA
SQGLQDAPAQAPSQAAFQAPAQPGTPPLPQDASQRELIGPSLVMQQVRERIAKVAGSMAP
ILVRGESGTGKELVAQSLHRRSQRASGPMVAVNCGAIPENLLEAEFFGARKGAYTGANQD
RDGFFQAAHGGTLFLDEIGELPLAMQAKLLRAIQERKVRPLGAQQEEAVDVRIVSATHRD
LAADVQAGRFRQDLYYRLNVIDIFIPPLRERREDLPALCEVLLARIAHESGQPVPQLGPE
ALQALAGHALPGNVRELENLLLRSVALSDGPFLHIEPARSGGPANAAVQSIAAEQTPAYL
APAAPRVAAAPPLPSALPAHGERFPLPQDLPADLQAWLDAIERDILVRALQEFGFNRTAA
ANRLGISLRQIRYRMERLQIHDPSDGVQP
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaaacaccactgttctggtcgtggacgacgagcccgacctccgaacgctt
tacgagctgaccctgctgcgtgaaggctaccgggtctttacggcgggctcggtgcaggaa
gcgcgcgcccagctgcaacagcgccgcttcgagattctgatcaccgacatgcgcctgccc
gacggcctgggcatggagctgctgcaggacctgcgccgccaaagccgcagcgagcgcgct
atcgtgatgaccgcttacggctcggccgataacgcggtcgcggcgttgcgcgagggggca
tttgactacctgaccaagccggtcgatctcaagcagttccgccaggtggtggcatcggcc
agccaggggctgcaggatgcgcctgcgcaagccccgtcgcaggccgcttttcaagcgccg
gcgcagccgggcacgcccccattgccgcaagacgcttcgcagcgcgaactgattggcccc
tcgctggtcatgcagcaggtgcgcgagcgcattgccaaggtggccggcagcatggcaccc
attctggtgcgcggcgagtcgggcaccggcaaggagctggtggcccagtccctgcaccgc
cgcagccagcgcgccagtggcccgatggtggcggtcaactgcggcgccatccctgaaaac
ctgctcgaagccgaattctttggagcccgcaaaggggcctatacgggcgccaaccaggac
cgcgacggctttttccaggccgcccatggtggcacgctcttcctcgacgaaatcggcgag
ctgccgctggcgatgcaggccaagctcctgcgggcgatccaggagcgcaaggtgcggccg
ctgggtgcccagcaggaggaagccgttgatgtgcgcatcgtcagcgccacccaccgtgac
ctggccgccgatgtgcaggcagggcggttccgccaggacctgtactaccgcctcaacgtc
atcgatatcttcatcccgccactgcgcgaacgccgcgaggatctgccggcgctgtgcgag
gtgctgcttgcgcgcattgcccacgaaagcggccagccggtgccccagctcggcccggag
gccttgcaagcgcttgccggccacgcactgccgggcaacgtgcgcgaactggagaacctg
ctgctgcgctctgtcgcgctgagtgacgggccgtttctgcatatcgagcctgcgcgctcc
ggggggcctgcgaacgctgcagttcagagcatcgctgccgagcaaacccctgcctacctg
gcgcccgccgcgccacgggtggccgcagcaccgcccctcccctcggcgctaccggcccac
ggcgagcgctttccccttccgcaggatctgccagccgatctgcaggcctggctcgatgcc
atcgagcgcgatatcctcgtgcgtgcgctgcaggagttcggcttcaaccgcacagccgcc
gccaaccggctgggcatcagcctgcgccagatccgctaccgcatggaacggctgcagatc
cacgatcccagcgatggggtacagccctag
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