Comamonas sediminis: ACQYWY_22570
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Entry
ACQYWY_22570 CDS
T11250
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
csen Comamonas sediminis
Pathway
csen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACQYWY_22570 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csen03019
]
ACQYWY_22570 (pcnB)
Enzymes [BR:
csen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
ACQYWY_22570 (pcnB)
Messenger RNA biogenesis [BR:
csen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACQYWY_22570 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Slu7
DUF2204
Motif
Other DBs
NCBI-ProteinID:
XTV00711
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All DBs
Position
4941997..4943613
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AA seq
538 aa
AA seq
DB search
MIKTIIDKLLGKATAASKTKNPFGKREEVGVDVHNIDPKLVDRRALDVCSTLKEAGFEAY
IVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRAFIIGRRFRIVHVVYGRGRENEVIE
VTTFRAFLDSSKAEQVQGNEKTSKAALAGMKLAVDESGRVLRDNVWGPQNEDAARRDFTV
NAMYYDPQTQIVVDYHKGIRDSQKHVLRMIGDPATRYREDPVRIIRAVRFAAKLSKKGFT
LDPKTAKPLVECAQLLQEVPQSRMFDEMLKLLQTGHSLASIEQLRLLGLAKGIYPLLDVV
VDRADLPFVQAALMDTDRRVAEGKSVAPSFLLACVLWQDVKAGWDKRMLKGEHPHPALQD
AIDDVFNHRIGDVSGRGKLAADMREIWVMQPRFEKRTGSTPFGMIAQARFRAGFDFLRLR
ADVGEVDEALANWWQEFQQADEARREDLIAQVREEQRAKPKAGAAKPKRAPRKPAAATEA
QEGSSLDQVAQQAIDSESAAAGDAPAKKRRRRRRKPGAGDAGGAAGGGNGGDAAAHGD
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaccatcatcgataaattgctcggcaaagccacggcggccagcaagaccaag
aacccctttggcaagcgcgaggaagtcggcgtcgatgtgcacaacatcgatcccaagctg
gtggaccgccgggcgctggatgtctgcagcacgttgaaggaagcagggtttgaggcctat
atcgtcggcggggccgtgcgcgacctgctgctgggcctgcgccccaaggacttcgacgtg
gccaccaacgccacgcccgagcaggtcaagagcctgttccgccgcgccttcatcatcggc
cggcgttttcgcattgtgcacgtggtctatggccgtggccgcgagaacgaggtcatcgaa
gtcaccaccttccgggcctttctggacagctccaaggccgaacaggtgcagggcaacgag
aaaaccagcaaggccgcactggccggcatgaagctggcggtggacgaaagcggccgtgtg
ctgcgcgacaacgtctggggtccccagaacgaagatgcggcgcggcgcgacttcaccgtc
aacgccatgtactacgacccgcagacccagatcgtcgtggactaccacaagggcatccgc
gactcgcaaaagcatgtgctgcgcatgattggtgatccggccacccgctaccgcgaagac
ccggtgcgcatcatccgcgccgtgcgctttgccgccaagctcagcaagaagggcttcacg
ctcgaccccaagaccgccaaaccgctggtcgaatgtgcccagctgctgcaggaagtgccg
caaagccgcatgtttgacgaaatgctcaagcttttgcagacagggcattcgctggcctcg
atcgagcaactgcgcctgctgggcctggccaagggcatctacccgctgctggatgtggtg
gtggaccgcgccgacctgccgtttgtgcaggctgcgctgatggacaccgaccgccgcgtg
gccgaaggcaagagcgtggcgccaagcttcttgctcgcctgcgtgctgtggcaggacgtg
aaagcgggctgggacaagcgcatgctcaaaggcgagcacccgcacccggcgctgcaggat
gcgatcgacgatgtcttcaaccaccgcatcggcgatgtctccggccggggcaagctcgcc
gccgacatgcgcgaaatctgggtgatgcagccgcgctttgaaaagcgcaccggcagcacg
ccgttcggcatgatcgcacaggcgcgcttccgtgccggcttcgactttctgcgtctgcgc
gccgatgtgggcgaggtggacgaagcgctggccaactggtggcaggagttccagcaggcc
gatgaggcccgccgcgaagacctgatcgcccaggtgcgtgaagagcagcgtgccaagccc
aaggcaggcgctgccaagcccaagcgcgccccgagaaagccggcagccgccacagaggcg
caggaaggctccagcctggaccaggtggctcagcaggccatcgacagcgagagcgccgcc
gctggcgatgcgccagcgaagaagcgccgccgccgacgccgcaaacccggtgcgggtgat
gctggcggtgcagcaggtggcggcaatggtggtgatgcagccgcccatggcgactga
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