Comamonas serinivorans: CCO03_04970
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Entry
CCO03_04970 CDS
T04892
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cser
Comamonas serinivorans
Pathway
cser03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cser00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCO03_04970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cser03019
]
CCO03_04970
03016 Transfer RNA biogenesis [BR:
cser03016
]
CCO03_04970
Enzymes [BR:
cser01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CCO03_04970
Messenger RNA biogenesis [BR:
cser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CCO03_04970
Transfer RNA biogenesis [BR:
cser03016
]
Prokaryotic type
tRNA degradation factors
CCO03_04970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
DUF5813
Motif
Other DBs
NCBI-ProteinID:
ARU04110
UniProt:
A0A1Y0EKY4
LinkDB
All DBs
Position
1184269..1186602
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AA seq
777 aa
AA seq
DB search
MSMFNKITKTFEWGGKTVVMETGEVARQATGAVLVNIDGTVVLATVVASKNAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSELETLTSRLIDRPIRPLFPEGFFNEVHVVIHTV
SLNPEVDADIAAMIAVSAALSISGIPFNGPIGAARVGYINNEYVLNPGQTARKSSKLDLV
VAGTEQAVLMVESEAQQLPEDVMLGAVVFGHEQGKIAIEAIHELVREAGKPLWVENGAWA
PEVKDEAFVAKVGALAEDKLRAAYQIRSKQARTQALRQAQADVLAALKDEGVTFDAVKVE
GLLFEIEARIVRGQILEGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVT
TLGTERDAQRIDALAGEFEDRFLFHYNMPPFATGEVGRMGSTKRREVGHGRLAKRALVAV
LPSKDEFPYTVRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKDGNR
FAVLTDILGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITKDIMQIALAQAKEARMHIL
GKMQEAMGEAKADVSEFAPRLTTIKINPEKIRDVIGKGGAVIRGLQEETGTQINIDEDGT
ITIASTDPAMADVAKKRIEAITAEVEVGSVYEGPIVKILDFGALVNVLPGKDGLLHISQI
AHERVEKVSDYLQEGQVVRVKVLEVNDRGQIKLSLKALQERPEGLDDGRGERAERGERSE
RGERGERPRRERSDRGERSERGDRVERGERPERAERSERQERDDERQGAEQQQQQQQ
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaacaaaatcaccaagaccttcgagtggggcggcaagaccgtcgtcatg
gaaacgggcgaagtggcccgccaggccacgggcgcggtgctcgtcaacatcgacggcacg
gtggtgctggccacggtcgtggcctccaaaaacgccaagcccggtcaggacttcttcccg
ctgaccgtcgattacatcgagaagacctacgcagccggcaagatccccggcagcttcttc
aagcgtgaagccaagcccagcgaactggaaacgctgaccagccgcctgatcgaccgcccg
atccgcccgctgttccctgaaggcttcttcaacgaagtgcacgtggtgatccacaccgtg
tcgctgaatcccgaagtggatgccgacatcgccgccatgatcgccgtgtcggccgcgctg
tcgatttccggtattccgttcaacggccccattggcgccgcgcgcgtgggctacatcaac
aacgaatacgtgctgaacccgggccagaccgcgcgcaagagcagcaagctggacctggtg
gtggccggcaccgagcaggccgtgctgatggtcgagtcggaagcgcagcagttgcccgaa
gacgtcatgctgggcgccgtggtctttggtcatgagcaaggcaagatcgccattgaggcc
atccacgaactggtgcgcgaagccggcaagcccctgtgggtcgaaaacggcgcctgggcg
cccgaagtcaaggacgaggctttcgtcgccaaagtcggcgcgctggccgaagacaagctg
cgtgcggcctaccagatccgcagcaagcaggcccgcacgcaagccctgcgtcaggcacag
gccgatgtgctggccgcgctgaaggacgagggcgtgaccttcgacgccgtgaaggtggaa
ggcctgctgttcgagatcgaagcccgcatcgtgcgcggccagatcctggaaggcgaaccc
cgcatcgacggccgcgacacgcgcaccgtgcgcccgatcgagatccgcaactccgtgctg
ccgcgcacccatggctcggccctgttcacgcgcggcgagacgcaggccctggtcgtcacc
acgctgggcaccgagcgcgatgcgcagcgcatcgacgcgctggccggcgagttcgaagac
cgcttcctgttccactacaacatgcctcccttcgccacgggcgaagtcggccgcatgggc
tcgaccaagcgccgcgaagtcggccacggacgcctggccaagcgcgccctggtggcggtg
ctgccgagcaaggacgagttcccctacaccgtgcgcgtggtgtccgagatcaccgaatcc
aatggctcgtcgtcgatggcgtcggtctgcggcggctgcctgtcgatgatggacgccggc
gtgcccatgaaggcgcacgtggccggcatcgccatgggtctgatcaaggacggcaaccgc
tttgccgtgctgaccgacatcctgggcgatgaggaccacctgggcgacatggacttcaag
gtggccggcacgaccaacggcatcaccgccttgcagatggacatcaagatcgagggcatc
accaaggacatcatgcagatcgccctggcgcaggccaaggaagcgcgcatgcacatcctg
ggcaagatgcaggaggccatgggcgaagccaaggccgatgtgtccgagttcgcgccgcgc
ctgaccacgatcaagatcaaccccgagaagatccgcgacgtgatcggcaagggtggcgcg
gtcatccgcggcctgcaggaagaaaccggcacgcagatcaacatcgacgaagacggcacc
atcaccatcgcgtcgaccgacccggccatggccgatgtggccaagaagcgcatcgaggcc
atcacggccgaggtggaagtgggctcggtctacgaaggccccatcgtcaagatcctggac
ttcggcgccctggtcaacgtgctgcccggcaaggatggtctgctgcacatcagccagatc
gcccacgagcgcgtggaaaaggtgagcgactacctgcaagaaggtcaggtcgtgcgcgtg
aaggtgctcgaggtcaacgaccgcggccagatcaagctgtcgctgaaggcgttgcaagaa
cgtcccgagggcctggatgacggccgtggcgagcgcgcagaacgtggtgagcgttcggag
cgtggcgaacgcggcgagcgtccgcgccgcgagcgttctgatcgtggtgagcgttcggag
cgtggcgaccgtgtggaacgtggcgagcgcccggagcgcgccgaacgcagcgaacgccag
gagcgtgacgacgagcgtcaaggcgcggagcaacagcagcaacagcagcagtga
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