Comamonas serinivorans: CCO03_05565
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Entry
CCO03_05565 CDS
T04892
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cser
Comamonas serinivorans
Pathway
cser03410
Base excision repair
cser03430
Mismatch repair
cser03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CCO03_05565
03430 Mismatch repair
CCO03_05565
03440 Homologous recombination
CCO03_05565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cser03400
]
CCO03_05565
DNA repair and recombination proteins [BR:
cser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CCO03_05565
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CCO03_05565
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCO03_05565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ARU04214
UniProt:
A0A1Y0EKP7
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All DBs
Position
complement(1313433..1315202)
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AA seq
589 aa
AA seq
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MRFEPRDAPPRATWALTQAGLHPLLAQLYAARGVQAADLDDKLTRLLPPDTLQGTREAAR
LLADAIAADQRLVIVADYDCDGATACAVALRGLRMLGARQVDFVVPDRVVDGYGLTPAIA
DRVKAKGADLLITVDNGIASADGVAHAQALGLQVLVTDHHLPGPELPAAEVIVNPNQPGC
TFASKHLAGVGVMFYVLMALRAELRARGVFTGAADSQAVSGQLLSPLNGSLAIPQPKLDA
LLPLVALGTVADVVRLDANNRRLVAQGLKRIRAGHMPPGLAALFQVAGREAWRASTFDFG
FALGPRINAAGRLSDMTLGITLLSTDDPQQAHELATKLDAINRERRVIEADMREQAEAAA
AALFDPEEAPPPAVTVFDPDFHEGVIGIVASRLKEQLHRPCFVFAPSGAPGHEHELKGSG
RSIEGFHLRDALDLVAKRAPGVLKRFGGHAMAAGCTIAEDQYDRFERTLAEIAAEWLDDA
TLTRRLATDGPLPPEFRQADIAELLDQAIWGQGFAAPVFSEALELVSQRIVGERHLALKL
RHQGQVVDAIWFGRQEPVPAQATLAYRLESDDWKGQRRVRFVVQGMADA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgcgctttgaaccccgcgacgcgccaccccgcgccacctgggccctcacccaggccggc
ctgcaccccttgctggcccagctctatgccgcgcgcggcgtgcaggcggccgacctcgac
gacaagctgacccggctgctgccgcccgacaccctccaaggcacccgcgaggccgcgcgc
ctgctggccgacgccatcgccgccgaccagcgcctggtcatcgtggccgactacgactgc
gacggtgccaccgcctgcgccgtggccctgcgcggcctgcgcatgctgggcgcgcggcag
gtcgacttcgtcgtgcccgaccgcgtcgtcgacggctacgggctgacgcccgcgattgcc
gaccgcgtcaaggccaagggggctgacctgctcatcaccgtggacaacggcatcgccagc
gccgacggcgtggcccacgcgcaggcgctgggcctgcaagtgctggtcaccgaccaccac
ctgcccggccccgagctgcccgcggccgaggtcatcgtcaaccccaaccagcctggctgc
acctttgccagcaaacacctggcgggcgtgggcgtgatgttctacgtgctgatggccttg
cgtgccgagctgcgcgcgcggggcgtgttcaccggcgcagccgattcccaggcggtatcc
ggccagttgctttctcccttgaacggcagcctggccataccccaacccaagctggacgcc
ctgctgccgctggtcgcgctgggcaccgtggccgacgtggtcaggctggacgccaacaac
cgccgcctcgtcgcccaggggctcaagcgcatccgcgccggccacatgccgcccggcctg
gcggcgctgttccaggtggccgggcgcgaggcctggcgcgccagcaccttcgatttcggc
tttgcgctggggccgcgcatcaacgccgccggccggctgtcggacatgacgctgggcatc
acgctgctgagcaccgacgacccccagcaggcgcacgagctggccaccaaactggacgcg
atcaaccgtgagcgacgcgtcatcgaggccgacatgcgcgagcaggccgaggccgccgcc
gccgcgctgttcgaccccgaagaagcgccgccgcctgcggtgaccgtgttcgaccccgac
ttccacgaaggcgtgatcggcatcgtcgcctcgcgcctcaaggaacagctgcaccgcccc
tgcttcgtgttcgcgcccagcggcgcacccgggcacgaacacgagctcaagggctcgggc
cgctccatcgagggctttcacctgcgcgacgcgctggacctggtcgccaagcgcgcgccc
ggcgtgctcaaacgctttggcggccacgccatggccgcgggctgcaccatcgccgaggac
cagtacgaccgcttcgagcgcaccctggccgagatcgccgccgagtggctggacgacgcc
acgctgacgcggcgcctggccaccgacgggccgctgccgcccgagttccggcaggccgac
atcgccgagctgctcgaccaggccatctggggccagggctttgccgccccggtgttcagc
gaagcgctggagctggtcagccagcgcatcgtgggcgagcggcacctggcgctcaagctg
cgccaccagggccaggtcgtcgacgccatctggttcggccggcaagagcccgtgcccgcc
caggccacgctggcctaccgcctggaaagcgacgactggaaaggccagcgccgcgtgcgc
ttcgtggtccagggcatggccgacgcgtga
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