Comamonas serinivorans: CCO03_07780
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Entry
CCO03_07780 CDS
T04892
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cser
Comamonas serinivorans
Pathway
cser03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cser00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCO03_07780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cser03019
]
CCO03_07780
Enzymes [BR:
cser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCO03_07780
Messenger RNA biogenesis [BR:
cser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCO03_07780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
HI1480
AAA_22
Utp25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ARU06729
UniProt:
A0A1Y0ETT6
LinkDB
All DBs
Position
complement(1824272..1826248)
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AA seq
658 aa
AA seq
DB search
MTFDDLNLAPAILDAVRDMGYDAPTPIQAQAIPLVLEGHDLLAGAQTGTGKTAAFALPLL
NKLSQQAAGKSKFGGKAVRALVLTPTRELAAQIDDNVRAYCKNLPQLNSTVIFGGVGMKP
QIDRLAKGVDVLVATPGRLLDLQDQGYLDLSTVEILVLDEADRMLDMGFIHDVKKVLKLL
PKDKQSLLFSATFSNEIRELANGLLHSPKSIQVTPPNTTVQRITQLIHPVGRGKKKAALL
SIIEQHNWSQVLVFTRTKYGANSVAEYLTKNGVQAMALHGNKSQTARTQALAGFKSGELR
ALVATDIAARGIDIEDLPHVVNYEIPNVPEDYVHRIGRTGRAGADGHAVSLVCMDEEGFM
MEIERFTKQEIPAQMLDGFGPEEGERAEPIAMGRQTLWGGLGKPPSRDVMAAAAKAARQE
MMQRIRDNKATQGQKPKRADGDAEADGQRPARGNAQRPARGNAGQAASADGRPGQGHNRS
RRRGNGAGGSAAPRADFQERVDGEAGHAPMREPRADGEGGGRNRRSRAPYGQDRNDGQRA
QPRERADFDEDYDPDLERLPRNVDPLQTNLHNRRSNGVRRPAAPGSQPDPMRTSIDAMGA
GKRYGGGGGAGGNRGGNHFGGGAGNGGGRGRSRSRSGGGGGGGSSNGGGNGWRSLNGR
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgatgatttgaatctggcgccagccatcctggacgccgtgcgcgacatgggc
tacgacgccccgactccgattcaagcgcaagccattcccctggttctggaaggccatgat
ctgctggccggcgcccagaccggcaccggcaaaacagccgccttcgccctgcccttgctg
aacaagctgagccagcaagccgccggcaagagcaaattcggcggcaaggccgtgcgcgcc
ctggtgctgacccccacgcgcgagctggccgcacagatcgacgacaacgtccgcgcctat
tgcaagaacctgccccagctgaactccaccgtgatcttcggcggcgtgggcatgaagccg
cagatcgaccgcctcgccaagggcgtggacgtgctggtggccacaccgggtcgcctgctc
gacctgcaggaccagggctacctcgacctgtccacggtcgaaatcctggtgctggacgaa
gccgaccgcatgctggacatgggcttcatccacgacgtgaagaaggtgctcaagctgctg
cccaaggacaagcaaagcctgctgttctcggccaccttcagcaacgagatccgcgagctg
gccaacggcctgctgcactcgcccaagagcatccaggtgacgccgcccaacacgacggtg
cagcgcatcacgcagctcatccacccggtgggccgcggcaagaaaaaggctgccttgctg
tccatcatcgagcagcacaactggagccaggtgctggtcttcacgcgcaccaagtacggt
gccaacagcgtggccgagtacctgaccaagaacggcgtacaggccatggccttgcacggc
aacaagagccagaccgcccgcacgcaggccctggccggcttcaagagcggtgagttgcgc
gcgctggtggcgaccgacatcgccgcccgtggcatcgacatcgaagacctgccgcacgtc
gtgaactacgaaattcccaacgtgccggaagactacgtgcaccgcatcggccgcaccggc
cgcgccggcgccgatggacacgccgtgagcttggtctgcatggacgaagaaggcttcatg
atggagatcgaacgcttcaccaagcaggagatccccgcccagatgctcgacggcttcggc
cccgaagaaggcgagcgcgccgaacccatcgccatgggacgccagaccctgtggggcggc
ctgggcaagccgcccagccgcgacgtgatggccgctgccgccaaggccgcgcgccaggaa
atgatgcagcgcatccgcgacaacaaggccacgcaagggcaaaagcccaagcgtgccgat
ggcgacgcggaagccgacggccagcgcccggcacgcggcaacgcccaacgcccggcgcgt
ggcaatgccggccaggctgccagcgccgatggccgtccgggccagggccacaaccgcagc
cgccgccgcggcaatggtgccggcggcagcgcggcaccgcgcgccgacttccaggagcgc
gttgatggcgaagccggccacgcaccgatgcgcgagcctcgcgccgatggcgagggcggc
ggtcgcaaccgccgcagccgcgcgccctatggccaggaccgcaacgacggtcagcgcgcc
cagccccgtgaacgcgccgacttcgacgaggactacgatcccgatctggaacgcctgcca
cgcaacgtcgacccgttgcaaaccaacctgcacaaccgccgcagcaacggcgtgcgccgt
ccggccgcgccgggttcgcagccggatccgatgcgcaccagcatcgatgccatgggcgcc
ggcaagcgctatggcggcggcggcggtgccggcggcaaccgtggcggcaaccacttcggt
ggcggcgcgggcaatggcggcggccgtggccgcagccgttcgcgcagtggcggtggtggt
ggcggcggaagcagcaacggcggcggcaacggctggcgttcgctcaacggccgctga
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