Comamonas serinivorans: CCO03_14360
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Entry
CCO03_14360 CDS
T04892
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cser
Comamonas serinivorans
Pathway
cser03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCO03_14360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cser03400
]
CCO03_14360
Enzymes [BR:
cser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCO03_14360
DNA repair and recombination proteins [BR:
cser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCO03_14360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ARU05708
UniProt:
A0A1Y0EQB8
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All DBs
Position
3375654..3379205
Genome browser
AA seq
1183 aa
AA seq
DB search
MELPKLQPGKRLALPRPSTSADALLLAELAQREKAAGRLVAIVCADAGDAHRLQDELKFF
APELRLTLFPDWETLPYDSFSPHQDLISERLATLWAIRQGQADVVLLPATTALYRLAPPA
FLAGYTFHFKAGQTLDEAALKSQLTLAGYTHVNQVVSPGEYAVRGSLIDLFPMGSPLPYR
VDLFDDEIDTIRAFDPDTQRSLYPVPEVRLLPGREFPMDDAARARFRSRWRELLEGDPTR
SRIYKDMGNGVATAGIEYYLPLFFDDTATVFDYLSGATAGSTPREAASAEPSSLVLVLHG
DLEAAFQQFWQDTQERHRLVQGDPDHPVLPPAALFLNAEQFYVAAKPHAQLALRRADQVS
DEQQATAYAEFAPLPDLSVVRGADDPLQRLQAFVQAAPRQGLRVLVLAESEGRRESLLDF
LRASHLNPPAFDHLAEFRASDEPLGIATAALAAGFGWPEGGVALVTETELFAGGTGVRRR
RRQEQQSDLDTLIKDLSELKVGDPVVHSAHGIGRYHGLVNMDVGQLNPDGSPALQEFLHL
EYAGNATLYVPVSQLHLIGRYSGVAPEQAPLHKLGGSQWEKAKRKAAEQVRDAAAELLNI
YARRAAREGHAFRFAENDYAQFAQDFGFEETADQHAAITAVINDMISPQPMDRLVCGDVG
FGKTEVALRAAFVAVTGGKQVAFLAPTTLLAEQHYQTLVDRFSRWPIKIAEMSRFRSAKE
IKAAATGIAEGTVDIVVGTHKLLSESVQFKNLGLLIIDEEHRFGVRHKEAMKALRAEVDV
LTLTATPIPRTMGMALEGLRDLSVIATAPQRRLAIKTFVRSESNGVIREAVLRELKRGGQ
VYFLHNEVETIENRRQALEELLPEARIAVAHGQMPERELEKVMRDFVAQRHNILLCSTII
ETGIDVPTANTIVISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIDSLTKQAEQRLD
AIQQMEELGSGFYLAMHDLEIRGAGEVLGENQSGNMMEVGFQLYNEMLADAVKALKAGKE
PDLLSPMQATTEINLHVPALLPTDYCGDVQLRLSLYKRLATAKTNDQVDRIVEELVDRFG
KLPPQAQALIDVHRLRVLSQPYGVQKVDAAPGVIHITFKQGASVEPLAIIHLIQKNKHIK
LAGNDKLRIERALPEAKDRAQMVRDVLRSLGKPAEAVAAPAQA
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggaactccccaaacttcaacctggcaagcggctggcgctgccgcgcccctccacctcg
gccgatgccttgctgctggccgagctggcccagcgcgagaaggccgcggggcggctggtg
gccatcgtctgcgccgatgccggcgatgcccatcgcctgcaggatgagctgaagttcttc
gcgcccgagctgcggctgacgctgttccccgactgggagaccctgccttacgacagcttc
tcgccgcaccaggacctgatcagcgaacggttggccacgctctgggccattcggcagggc
caggctgatgtggtgctgctgccggccaccacggcgctgtaccgcctggcgccgcccgcc
ttcctggctggctacaccttccacttcaaggccgggcagacgctggacgaagccgcgctc
aaaagccagctgacgctggccggctacacccacgtcaaccaggtggtgagtccgggcgag
tacgccgtgcgcggcagcctgatcgacctgttccccatgggcagcccgctgccctaccgc
gtggacctgttcgacgacgagatcgacaccatccgggcgttcgaccccgacacgcagcgc
agcctgtacccggtgcccgaagtgcgcctgctgccgggccgcgagttccccatggacgac
gcggcgcgcgcgcgctttcgcagccgctggcgcgagctgctcgagggcgaccccacacgc
agccgcatctacaaggacatgggcaacggcgtcgccaccgccggcatcgagtactacctg
ccgctgttctttgacgacacggccacggtgttcgactacctgagcggtgccaccgccggg
tcgaccccgagggaggcagcgtccgccgagccgtcctcgctggtgctggtgctgcacggc
gacctggaagccgccttccagcagttctggcaggacacgcaggagcgccaccgcctggtg
cagggcgaccccgaccacccggtgctgccccccgcggcgctgttcctgaacgccgagcag
ttctatgtggccgccaagccgcatgcacaactcgcactgcgccgggccgaccaggtcagc
gacgagcagcaggccacggcctatgccgagttcgcccccctgcccgacctctcggtcgtg
cgcggcgccgacgacccgctgcagcgcctgcaggcctttgtgcaggccgcgccccggcag
ggtcttcgcgtgctggtgctggccgagagcgagggccggcgcgaaagcctgctggacttc
ctgcgcgcctcgcacctgaacccgcccgccttcgaccacctggccgagttccgcgccagc
gacgagcccctcggcatcgccaccgctgcgctggccgccggattcggctggcccgagggc
ggcgtggccttggtcaccgagaccgagctgttcgcgggcggcacgggcgtgcgccgacgg
cgccggcaggagcagcagagcgacctggacacgctgatcaaggacctgtccgagctgaag
gtgggggaccccgtcgtccacagtgcccacggcatcggccgctaccacggcctggtcaac
atggacgtgggccagctgaaccccgacggcagccccgcgctgcaggaattcctgcacctg
gagtacgcgggcaacgccacgctctacgtgcccgtgagccagctgcacctgatcggccgc
tattcgggcgtggcgcccgagcaggcgccgctgcacaagctgggcggcagccagtgggag
aaggccaagcgcaaggccgccgagcaggtgcgcgacgcggcagccgagctgctcaacatc
tacgcgcgtcgcgccgcgcgcgagggccatgccttccgctttgccgagaacgactacgcg
cagttcgcgcaggacttcggcttcgaggagacggccgatcagcacgccgccatcacggcg
gtcatcaacgacatgatctcgccccagcccatggaccggctggtctgcggcgacgtgggc
ttcggcaagaccgaggtggcgctgcgcgcggccttcgtggccgtgacgggcggcaaacag
gtcgcgtttttggcacccaccaccttgctggccgagcagcattaccaaacgctggtcgac
cgcttttcgcgctggccgatcaagatcgccgagatgagccgctttcgctcggccaaggag
atcaaggcggccgccacgggcatcgccgaaggcacggtcgacatcgtggtcggcacgcac
aagctgctgtcggaaagcgtgcagttcaagaacctgggcctgctgatcatcgacgaggag
caccgctttggcgtgcgccacaaggaggccatgaaagccctgcgcgccgaggtcgacgtg
ctgacgctgacggccacgcccatcccgcgcaccatgggcatggcgctggaaggcctgcgc
gacctctcggtcatcgccaccgcgccgcagcgccgcctggccatcaagacctttgtgcgc
agcgaaagcaatggcgtgatccgcgaggccgtgctgcgcgagctcaagcgcggcggccag
gtctacttcctgcacaacgaggtcgagaccatcgagaaccgccgccaggccctggaggag
ctgctgcccgaggcacgcatcgccgtcgcccatggccagatgcccgagcgcgagctggaa
aaggtgatgcgcgacttcgtcgcccagcgccacaacatcttgctgtgctcgaccatcatc
gagaccggcatcgacgtgcccacggccaacaccatcgtcatcagccgcgccgacaagttc
ggcctggcgcagctgcaccagctgcgcggccgcgtcgggcgctcgcaccaccaagcctat
gcctacctgatggtgccggacatcgacagcctgaccaagcaggccgagcagcgcctggac
gccatccagcagatggaagagctgggctcgggcttctacctggccatgcacgacctggag
atccgcggcgccggcgaggtgctgggcgagaaccagagcggcaacatgatggaggtgggc
ttccagctctacaacgagatgctggccgacgccgtgaaggcgctgaaggccggcaaggag
cccgacctgctcagccccatgcaggccaccaccgagatcaacctgcacgtgcccgccctg
ctgcccaccgattactgcggcgacgtgcagctgcgcctgtccctctacaagcgcctggcc
acggccaagaccaacgaccaggtcgaccgcatcgtcgaagagctggtcgaccgctttggc
aagctgccgccgcaggcgcaggcgctgatcgacgtgcaccggctgcgcgtgctgtcgcag
ccctatggcgtgcaaaaggtggacgccgcacccggcgtgatccacatcaccttcaagcag
ggcgcctcggtcgagccgctggccatcatccacctcatccagaagaacaagcacatcaag
ctcgccggcaacgacaagctgcgcatcgaacgcgccctgcccgaggccaaggaccgcgcg
cagatggtgcgcgacgtgttgcgcagcctgggcaagccggccgaagccgtggccgcgccc
gcgcaggcctga
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