Comamonas serinivorans: CCO03_14505
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Entry
CCO03_14505 CDS
T04892
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cser
Comamonas serinivorans
Pathway
cser03030
DNA replication
cser03430
Mismatch repair
cser03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCO03_14505
03430 Mismatch repair
CCO03_14505
03440 Homologous recombination
CCO03_14505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cser03032
]
CCO03_14505
03400 DNA repair and recombination proteins [BR:
cser03400
]
CCO03_14505
Enzymes [BR:
cser01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CCO03_14505
DNA replication proteins [BR:
cser03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CCO03_14505
DNA repair and recombination proteins [BR:
cser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CCO03_14505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
y4wI_C
Motif
Other DBs
NCBI-ProteinID:
ARU05734
UniProt:
A0A1Y0EQ01
LinkDB
All DBs
Position
complement(3412535..3416095)
Genome browser
AA seq
1186 aa
AA seq
DB search
MFVHLRSHSEFSVVDGTSTIGDLVKAAAKDGQPALAVTDLSNLFGAVKLYKGARGKGVKP
VLGAEVVISGLPGMAPGDTSRIVLLVQSTQGYFNLCEILARAWTRGVERDQAVAQFAWIE
ELAEGLMALSGAAAGPVGQALLAGAEARASESALALAAVFPHRFYLELQRAGRADDEAQV
VAAVQLAARLNLPVVATHPIQFLTPDDYEAHEARVCIAEGEVLGNAKRVRRFTREQCFKT
HEQMEALFADVPSAVANTVEIARRCNVELVLGKPQLPNFPTPLLDDGTPMSVEQYFRQLS
NEGLEERLVLLFPDPAKRDEARPRYQERLEFELGTILNMGFPGYFLIVADFIHWAKNNGC
PVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVID
YVKQKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPAKPGMSYTLAYP
PEPKKEGDKNNYALELEPLLYERVRKEEDVKNLIEMAQKLEGLTRNIGMHAGGVVIAPGK
LTDFCPLYQQPGSDSAVSQFDKNDVEDIGLVKFDFLGLATLTIMELAREFIVRRHKGQEN
FAFETIPLDDRATYTLFSEGRTEAVFQFESRGMQAMLKDAKPSRLEDLIALNALYRPGPM
DLIPTFIARKHGREEVEYPHPLVEGVLAETYGIMVYQEQVMQTAQVLGGYSLGGADLLRR
AMGKKKVEEMVKHRATFREGAAKNGINEAKADEIFDLMEKFAGYGFNKSHAAAYSLLAYH
TGWLKVHYKAEFFCANMTVEMDNTDKLKVLYEDALREGLSFEMPDVNRGTYRFEPVSNTV
IRYGLGAVKGTGEQAIEAIIAAREGRGTGPKGDIAGPFKSLFDFCVRVDRARLNKRTLEA
LIKAGAFDAILRDRASLIASIDLAFDFASATHENANQGGLFDAFDDGPGASTEEPPLVAA
VPFGVREQLTLEKTAVGFYLSGHLFDEVEAEVRRFARRRIADLGETRDQLTLAGIIGDLR
VINGQRGKLALFKLDDKSASIEATADERVITAAKGLLKDDETVIVTALMQPDRFSGGFRL
KVTQVWSLAQARCRFGRFLRVVVGEAAPDVRALIAEHPAQVEVTEEGDLRHGLPVRIALE
RRPAEGGVGVTAELELGNRAWIFPSDEALKGWMAQADEGRAAVVYE
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctgcgcagtcattcagagttttcggtcgtcgatggcacgagcaccatc
ggcgatctggtcaaggccgcggccaaggatgggcagcctgcgctggccgtcaccgacctg
agcaacctgttcggcgccgtcaagctctacaagggcgcgcgcggcaagggcgtcaagccg
gtgctgggggccgaggtggtgatcagcgggctgcccggtatggcgccgggcgacacctcg
cgcatcgtgttgctggtgcagagcacgcaaggctatttcaacctgtgcgaaatcctggcc
cgggcctggacgcggggcgtggagcgcgaccaggcggtggctcagttcgcctggatcgag
gaactggccgagggcttgatggccttgtcgggcgcggcggccggcccggtgggccaggcc
ttgctggcgggcgccgaggcgcgtgccagcgagtcggccctggccctggccgcggtgttt
ccgcaccgcttttacctggaactgcagcgcgccggccgtgccgatgacgaggcccaggtg
gtggccgccgtgcagctggccgcgcggctgaacctgccagtggtggccacgcaccccatc
cagttcctgacgccggacgattacgaggcgcacgaggcacgggtgtgcattgccgagggc
gaggtgctgggcaatgccaagcgggtgcgccgcttcacgcgcgagcagtgcttcaagacg
cacgagcagatggaggccttgtttgccgacgtgccgtcggccgtggcgaacacggtggaa
atcgcgcgtcgctgcaacgtggagctggtgctgggcaagccgcaattgcctaactttccc
acgccgctgctggacgatggcacgcccatgtcggtggagcagtacttccgccagctgtcg
aacgaggggttggaagagcggctggtgctgctgtttccggacccggccaagcgcgacgaa
gcccggccgcgctaccaggaacggctggagttcgagctcggcaccatcttgaacatgggc
tttccgggctacttcctcatcgtggccgacttcatccactgggccaagaacaacggctgc
cctgtgggcccgggccggggctcgggcgcgggctcgctggtggcttatgcgctcaagatc
accgacctggatccacttcagtacaacctgctgttcgaacgcttcctgaacccggagcgg
gtgtccatgcccgacttcgacatcgacttctgccagagcaaccgcgaccgcgtgatcgac
tacgtgaagcagaagtacggcaaggaggccgtgagccagatcgccaccttcggcaccatg
gcggccaaggccgccatccgcgacgtgggccgggtgatggacatgagctacaccttctgc
gacggcatctccaagctggtgccggccaagccgggcatgtcgtacacgctggcctacccg
cccgagcccaagaaggagggcgacaagaacaactacgcgctcgaattggagcccctgctg
tacgaacgcgtgcgcaaggaggaggacgtcaagaacctcatcgagatggcgcaaaagctc
gaagggctgacgcgcaacatcggcatgcacgcgggtggcgtggtgatcgcgccgggcaag
ctgacggatttctgcccgctgtaccagcagccgggcagcgactcggcggtgagccagttc
gacaagaacgacgtcgaggacatcgggctggtgaagttcgacttcctggggctggccacg
ctgaccatcatggaactcgcgcgcgagttcatcgtgcgccgccacaaggggcaggagaac
ttcgcgttcgagaccattccgctggacgaccgcgcgacctacacgctgttctcggagggc
cgcaccgaagccgtgttccagtttgaaagccgcggcatgcaggccatgctcaaggacgcc
aagcccagccggctggaagacctgatcgcgctgaacgccttgtaccgcccggggcccatg
gacctgatccccaccttcatcgcgcgcaagcacggccgcgaagaggtggagtacccgcac
ccactggtcgaaggggtgctggccgagacctacggcatcatggtgtaccaggagcaggtg
atgcagaccgcccaggtgctgggggggtactcgctgggtggcgccgacttgctgcgccgt
gccatgggcaaaaagaaggtggaggagatggtcaagcaccgagccaccttccgcgagggg
gcggccaagaacggcatcaacgaagccaaggccgacgagatcttcgacctgatggagaag
ttcgcgggctacggcttcaacaagtcgcacgcggccgcttactcgctgctggcctaccac
acgggctggctcaaggtgcactacaaggccgagttcttctgcgccaacatgaccgtggaa
atggacaacacggacaagctcaaggtgctctacgaagacgccttgcgcgagggcctgagc
ttcgagatgcccgacgtgaaccgcggcacctaccgcttcgagccggtgtccaacaccgtg
atccgctatggcctgggcgcggtcaaaggcacgggcgagcaagccatcgaggccatcatc
gccgcgcgtgaagggcggggcaccgggcccaagggcgacatcgcggggccgttcaagagc
ctgttcgatttctgcgtgcgcgtggaccgcgcccgcctcaacaagcgcacgctggaggcg
ctcatcaaggccggtgcgttcgacgccatcctgcgcgaccgcgccagcctcatcgcctcc
atcgacctggccttcgactttgccagcgccacgcacgagaacgccaaccagggcggcttg
ttcgatgcgtttgacgatggccccggcgccagcaccgaagaacccccgctggtggccgcc
gtgcccttcggcgtgcgcgagcagctcacgctcgagaagacggcggtgggcttttacctc
tcgggccatttgttcgacgaggtcgaggccgaggtgcgccgctttgcgcgccgccgcatc
gccgacctgggcgagacgcgcgaccagttgacgctggccggcatcatcggtgacttgcgc
gtcatcaatggccagcgcggcaagctggcgctgttcaagctggacgacaagtcggccagc
atcgaggccacggccgacgagcgggtgatcaccgccgccaaaggcctgctcaaggacgac
gagaccgtgatcgtcaccgcgctgatgcagcccgatcgcttttcgggtgggttccggctc
aaggtcactcaggtctggagcctggcgcaggcgcgttgtcgcttcggccgcttcctgcgc
gtggtcgtgggcgaggcggcccccgatgtgcgcgccctgatcgccgagcacccggcccag
gtcgaggtcacggaggagggcgacctgcgccacggcctgccggtgcgcattgcgctggag
cggcggcccgccgagggcggcgtcggggtgacggccgagctggagctgggcaaccgggcc
tggatcttcccgagcgacgaagcgctcaagggctggatggcgcaggccgacgaaggccgt
gcggcggtcgtctacgagtga
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