Comamonas serinivorans: CCO03_15495
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Entry
CCO03_15495 CDS
T04892
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cser
Comamonas serinivorans
Pathway
cser03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cser00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCO03_15495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cser03019
]
CCO03_15495
03009 Ribosome biogenesis [BR:
cser03009
]
CCO03_15495
Enzymes [BR:
cser01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CCO03_15495
Messenger RNA biogenesis [BR:
cser03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CCO03_15495
Ribosome biogenesis [BR:
cser03009
]
Prokaryotic type
rRNA processing factors
CCO03_15495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ARU06908
UniProt:
A0A1Y0ETQ1
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All DBs
Position
3636609..3639692
Genome browser
AA seq
1027 aa
AA seq
DB search
MKRMLINATQAEECRLAIVDGQKLLDYEVEIEGREQRKGNIYRAVVTRVEPSLEACFVDY
GEERHGFLPFKEISREYFAEGVSVSQARIQDVIREGQELVVQVEKEERGNKGAALTTFVS
LAGRYMVLMPNNPRGGGVSRRIDGANRAELKSAMDKLVYPKGMSVIARTAGTNKSARELQ
WDLDFLLKVWNAIDNAVVDGKGAELIYKESNLVIRAIRDYFSEDIKEILIDTDDIYEPAY
QFLTHVMPDYASRVKRYRDNAPLFSRFQIEHQIETAYARTVQLPSGGAIVIDHTEALVSI
DVNSARAIKGGDIEETATRTNLEAAEEVARQARLRDLGGLIVIDFIDMEDSKNRREVERR
LADAMDADRARVQFGSISKFGLMELSRQRLKPALAEGASIPCPRCGGSGHVRDTESSALQ
ILRIIQEEAMKDSTAAVYVQVPVEVASFLLNEKRAEIAKIELMQRISVLLIPNKTIETPH
YKLERLKFDDPRLDRIEPSYKQVDEFEDPTAITRRSSTPKNRQTPRIKNILHDGPAPELE
PQPEAAAAAPATPAVAPPPAPAPVVQPSVEVPGWIAKLLQIWRAIFGNDAPTMPMPTPAP
QPTPQPMAPAPQGPIDDAPAPGAEDRRNERSRRDGRDERRRGEGRDGRDGRRDERRRDTR
EGRDERRRDDTDCADRQDDDRSERQDRARGERPRSERSGERDRSDRGGERRARQDRSERD
DEAGDDERRSRRDERDSREPRESREPRELRENREPRESRDTREGREPREDRDSREGREPR
DNRDGRPSRDDRERERNGRDRRERDALSDDTGRDEAGATDDRQEAREPRERRSRDRFGRD
RRERGDRVERDDREDRDMPAQDDAQPDAAPTRAESAPRSYFQRAQGDASPARADVVNASA
DELASSPAPTTVSAAPANPAPVSPAPVAVAAVAAAEVVADTGRMPRIGRYELPVQELTQV
ASAAQLEWVNSNAERVAAVQAAIAAEPKPVHVPRPRPVLKPLDELPPVLVETKRQLVSPL
VEDDVSL
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctgatcaacgccacacaggccgaagagtgccgtctggcgatcgtggac
gggcagaagctgctcgattacgaggtggagattgaagggcgcgaacagcgcaagggcaac
atttaccgcgccgtggtgacacgcgtcgagccctcgctcgaagcctgtttcgtcgactac
ggcgaagagcgccacggctttctgccgttcaaggaaatctcccgcgaatacttcgccgaa
ggcgtttccgtcagccaggcccgcatccaggatgtgatccgcgagggccaggaactggtc
gtccaggtcgagaaggaagagcgcggcaacaagggcgctgcgctgaccaccttcgtcagc
ctcgccgggcgctacatggtgctgatgcccaacaacccgcgcggcggtggcgtgtcgcgc
cgcatcgatggtgccaaccgcgccgagctcaagtccgccatggacaagctggtctacccc
aagggcatgagcgtgattgcccgcaccgccggcaccaacaagagcgcccgcgaactgcag
tgggacctggacttcctgctcaaggtctggaatgccatcgacaacgccgtggtcgacggc
aagggcgccgagctgatctacaaggaatccaacctcgtcatccgggccatccgcgattac
ttcagcgaggacatcaaggaaatcctgatcgacacggacgacatctacgagccggcctac
cagttcctcacgcacgtgatgcccgactacgcatcgcgcgtgaagcgctaccgcgacaac
gccccgctgttctcgcgcttccagatcgaacaccagatcgagaccgcctacgcacgcacc
gtgcagctgccctcgggcggcgctatcgtcatcgaccacaccgaagccctggtctccatc
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggaaactgccacgcgcacc
aacctggaagcggccgaggaagtggcccgccaggcccgcctgcgcgacctgggcggcctc
atcgtgatcgacttcatcgacatggaggacagcaagaaccgccgcgaggtcgaacgccgc
ctggccgacgccatggacgccgatcgcgcccgcgtgcagttcggctcgatcagcaagttc
gggctcatggagctgagccgccagcgcctgaagccggcgctcgccgaaggcgcctccatc
ccctgcccgcgctgcggtggctcgggccatgtgcgcgacacggaaagctcggccctgcag
atcctgcgcatcatccaggaagaggccatgaaggacagcacggccgccgtgtacgtccag
gtgccggtcgaggtcgccagcttcctgctcaacgaaaagcgcgccgagatcgccaagatc
gaactcatgcagcgcatcagcgtgctgctgatccccaacaagacgatcgagacgccgcac
tacaagctcgaacgcctgaaattcgacgatccgcgtctggatcgcatcgagcccagctac
aagcaggtcgacgagttcgaggacccgacggccatcacccgccgctcaagcacgcccaag
aaccgccagacgccgcgcatcaagaacatcctgcacgacggtcccgcgcccgagctggaa
ccccagccggaagcggcagccgcagcgccggccacgccggccgtggcaccgccaccggcc
cctgcgcccgtggttcagccctccgtcgaggtgccgggctggatcgccaagctgctgcag
atctggcgcgccatcttcggcaacgacgcgccgaccatgccgatgcccacgccggcaccg
cagcccacgccccagcccatggcgcccgcgccgcaaggccccatcgacgacgcccccgcg
cctggcgccgaagaccgccgcaacgaacgcagccgccgcgacggccgtgacgaacgccgc
cgcggggaaggccgggatggacgcgatggccgccgcgacgagcgtcgccgggacacccgc
gaagggcgtgacgagcgccgccgcgacgacaccgactgtgccgaccgccaggacgacgac
cgcagcgagcgccaggaccgcgcccgcggtgagcgcccccgcagcgagcgcagcggtgaa
cgcgaccggagcgaccgcggcggcgaacgccgtgcgcgccaggaccgcagcgagcgcgac
gacgaggccggtgacgacgagcgccgcagccgccgcgacgaacgcgacagccgcgaaccg
cgtgaaagccgcgagccgcgcgaattgcgtgagaaccgcgaaccgcgcgagagccgtgac
acgcgcgaaggtcgcgagccccgcgaagaccgcgactcgcgtgagggccgtgagccgcgc
gacaaccgagacggccgtcccagccgcgacgaccgtgaacgcgagcgcaacggccgcgac
cgccgtgaacgcgatgcgctgagcgacgacaccggccgcgacgaggccggcgcgaccgac
gaccgccaggaagcgcgcgagccgcgtgagcgccgctcccgcgatcgctttggtcgcgac
cgccgtgaacgtggcgaccgtgtcgagcgcgacgaccgcgaggaccgtgacatgccggcc
caggacgacgcccagcccgatgccgcgccgacacgcgccgaatcggccccgcgttcgtac
ttccagcgtgcgcagggcgacgccagcccggcccgcgccgacgtggtgaacgcctcggcg
gacgagcttgccagcagccccgcgcccaccacggtcagcgcagcaccggccaacccggcc
cccgtgagcccggcgcccgtggcggtggccgctgtggccgccgccgaggtggtcgccgac
acaggccgcatgccgcgcatcggccggtacgagctgccggtgcaggagctgacccaggtg
gccagcgccgcgcaactggagtgggtgaactccaacgccgaacgcgtggccgccgtgcag
gccgccatcgccgccgagcccaagccggtgcacgtgccgcgtccccgcccggtgctcaag
ccgctggacgagctgccgccggtgctggtggaaaccaagcgtcagctggtcagcccgctc
gtcgaagacgacgtcagcctgtga
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