KEGG   Comamonas serinivorans: CCO03_16770
Entry
CCO03_16770       CDS       T04892                                 
Name
(GenBank) RNA-splicing ligase RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
cser  Comamonas serinivorans
Brite
KEGG Orthology (KO) [BR:cser00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cser03016]
    CCO03_16770
Enzymes [BR:cser01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     CCO03_16770
Transfer RNA biogenesis [BR:cser03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    CCO03_16770
 Prokaryotic type
   tRNA splicing ligases
    CCO03_16770
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: ARU06940
UniProt: A0A1Y0ETZ4
LinkDB
Position
3934638..3935810
AA seq 390 aa
MWTQGVPVEDEARDQLANISRLPIVFKHVAVMPDVHLGIGATIGSVVPTIKAIIPAAVGV
DLGCGMMACKTTLTASDLPDNLSAVRAAIERAVPVGMTPKRYGRDKGSWETPPAETDAAW
TRLVQEFDEICAAHPRIQNTNNHKHLGTLGTGNHFIELCLDEQQAVWIMLHSGSRGVGNA
IGSHFIELAKKDAERNQANLPDQNLAYFEEGAQYFGDYVKAVGWAQKFAAANREVMMIRT
INALRKVIAKPFETHLEAVNCHHNYVQKETHFGQDVFVTRKGAVNAEAGKLGIIPGSMGA
KSFIVRGKGHPESFNSCSHGAGRTMSRTKAKKLFTVEDHKRATEGVECRKDAEVIDEIPM
AYKDIDAVMAAQRELVDVVHVLKQVVCVKG
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgtggacgcagggcgtgcccgtggaagacgaggcccgcgaccagctggccaacatctcg
cgcctgcccatcgtgttcaagcacgtggcggtgatgcccgatgtgcacctgggcatcggc
gccaccatcggctcggtcgtgccgacgatcaaggccatcatcccggccgccgtgggtgtg
gacctgggctgcgggatgatggcctgcaagaccacgctgaccgcgagcgacctacccgac
aacctcagcgcggtgcgggcggccatcgagcgcgccgtgcccgtgggcatgacacccaag
cgctacggccgcgacaagggcagctgggaaaccccgcccgccgagaccgacgccgcctgg
acccgcctggtgcaggagttcgacgagatttgcgcggcgcacccgcgcatccaaaacacg
aacaaccacaagcacctgggtacgctgggcaccggcaaccacttcatcgagctgtgcctc
gatgaacaacaggccgtgtggatcatgctgcactcgggctcgcgtggcgtgggcaacgcg
attggctcgcacttcatcgagctggccaagaaggacgccgaacgcaaccaggccaacctg
ccggaccagaacctggcgtacttcgaagaaggcgcgcagtactttggcgactacgtgaag
gccgtgggctgggcgcagaagtttgcggcggccaaccgcgaagtgatgatgatccgcacg
atcaacgcgctgcgaaaggtcatcgccaagccgttcgagacgcacctggaagccgtgaac
tgccaccacaactacgtgcagaaagagacgcacttcggccaggacgtgttcgtgacgcga
aaaggcgccgtgaacgccgaggccggcaagctggggatcatccccggcagcatgggcgcc
aagagcttcatcgtgcgcggcaagggccaccccgagagcttcaacagctgcagccacggt
gccggccgcaccatgagccgcaccaaggccaagaagctgttcacggtggaggaccacaag
cgcgcgaccgaaggcgtggaatgccgcaaggacgccgaggtgatcgacgagatccccatg
gcctacaaggacatcgacgccgtgatggccgcccagcgcgagctggtcgacgtggtgcac
gtgctcaagcaggtggtgtgcgtgaagggctga

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