Chitinirhabdus sediminis: ACTSKR_06350
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Entry
ACTSKR_06350 CDS
T11791
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cses Chitinirhabdus sediminis
Pathway
cses03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cses00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACTSKR_06350 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cses03021
]
ACTSKR_06350 (rho)
03019 Messenger RNA biogenesis [BR:
cses03019
]
ACTSKR_06350 (rho)
Transcription machinery [BR:
cses03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACTSKR_06350 (rho)
Messenger RNA biogenesis [BR:
cses03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACTSKR_06350 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
AAA
AAA_22
Fungal_virus_P2_C
Mor
Motif
Other DBs
NCBI-ProteinID:
XZG71477
LinkDB
All DBs
Position
1266011..1267261
Genome browser
AA seq
416 aa
AA seq
DB search
MHLSELKRFHVSKLVEMAAEIEGASRMRKQDLIFALLKHQAKKGESIYGEGTLEVLPDGF
GFLRSPDSSYLAGPDDIYVSPSQIRRFNLHSGDTVEGEIRTPKEGERYFALVKVDKVNGE
PPENAKSKILFENLTPLFPTERLRLERDIKGSENISGRIIDLIAPIGKGQRGLLVAPPKS
GKTVMLQNIAHAITANHPDVELIVLLIDERPEEVTEMQRSVKGEVISSTFDEPATRHVQV
AEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFG
AARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNSEVHLDRRMAEKRIFPAININR
SGTRREELLIEQDKLQKIWVLRKLLYPMDDLEAMEFLQDKIKATKNNNDFFDSMRR
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcatttgtccgaactgaaacggttccatgtctcgaaactggtcgaaatggccgccgag
atcgagggcgcatcgcgtatgcgcaagcaggacctgatttttgccctgcttaaacatcag
gccaagaaaggggagagcatctacggcgaaggcacgctcgaagtgctgcccgatggcttt
ggctttctgcgcagcccggattcgagctacctcgccggtccggatgacatttacgtcagc
cccagccagatccgccgcttcaacctgcacagcggtgacacggttgaaggcgaaatccgc
acgcccaaggaaggcgagcgctatttcgcgctggtgaaggtcgacaaggtcaacggcgag
ccgcccgagaacgccaaaagcaagattctgtttgagaacctgacgccgctgttcccgacc
gagcgcctgcgtctggagcgtgacatcaagggcagcgagaacatcagcggccgcatcatt
gacctgatcgcgccgatcggcaaaggtcagcgtggcctgctggtggcgccgcccaagtcg
ggtaaaaccgtgatgctgcagaacattgcgcacgccatcaccgccaatcatcccgacgtt
gagctgatcgtgctgctgatcgacgagcgtccggaagaagtgaccgaaatgcagcgctcg
gtgaagggcgaagtcatcagctcgacctttgacgagccggccacgcgccacgtgcaagta
gccgaaatggtgatcgaaaaggccaagcgcctggttgagcacaaaaaagacgtggtgatt
ctgcttgactcgattacgcgtctggctcgcgcctacaacaccgtggtaccggcctcgggc
aaggtgctgacgggcggggtcgacgccaacgcgctgcagcgcccgaagcgtttttttggc
gcggcgcgcaacatcgaagaaggtggcagcctgaccatcatcgccaccgcgctgatcgat
accggttcgcgcatggacgacgtgatttacgaagaattcaagggtaccggcaactcggaa
gtccatctggaccgccgtatggccgagaagcggattttcccggcgatcaacatcaaccgc
tcgggcacccgccgcgaagagctgttgatcgagcaggacaaactgcagaagatctgggtg
ctgcgcaagctgctctacccgatggatgacctagaagcgatggaattcctgcaggacaag
atcaaggccaccaagaacaacaacgatttcttcgattcgatgcgccgctaa
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