Coccinella septempunctata (seven-spotted ladybird): 123310767
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Entry
123310767 CDS
T07873
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cset
Coccinella septempunctata (seven-spotted ladybird)
Pathway
cset03013
Nucleocytoplasmic transport
cset03015
mRNA surveillance pathway
cset03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cset00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123310767
09122 Translation
03013 Nucleocytoplasmic transport
123310767
03015 mRNA surveillance pathway
123310767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cset03019
]
123310767
03041 Spliceosome [BR:
cset03041
]
123310767
Enzymes [BR:
cset01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123310767
Messenger RNA biogenesis [BR:
cset03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123310767
Spliceosome [BR:
cset03041
]
Complex C
Other components
EJC/TREX
123310767
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123310767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
MoaE
Motif
Other DBs
NCBI-GeneID:
123310767
NCBI-ProteinID:
XP_044750347
LinkDB
All DBs
Position
4:12602990..12606761
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AA seq
425 aa
AA seq
DB search
MADADDLLDYEDEEQTEQNTSEAVAAAEPKKGVKGTYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTENVVYVLVMCHT
RELAFQISKEYERFSKYMPTIKVGVFFGGLPIQKDEELLKNNCPHIVVGTPGRILALVRS
KKLNLKHLKHFILDECDKMLELLDMRRDVQEIYRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVA
LAQLLTEQNFPAIGIHRNMSQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITFVSEESDAKILNEVQDRFDVNITELPDEIDLSS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgctgacgatcttctcgattacgaagatgaagaacaaactgaacaaaatact
tctgaggcagtagctgctgcagaaccaaaaaaaggtgttaagggtacttacgtatctata
catagttcaggtttcagagatttcttgttgaaaccagaaattttgcgtgccattgttgac
tgtggttttgaacatccctcagaagttcaacatgaatgtattcctcaagccgttcttggc
atggatattctatgccaggctaaatctggtatgggtaaaactgccgtgtttgtattggct
actcttcagcagcttgagccaacagaaaatgtagtttatgtactagtaatgtgccatact
agagagctggccttccaaatcagtaaagagtatgaaagatttagtaaatatatgccaact
attaaggttggcgtgttctttgggggattgccaattcaaaaggacgaagaattgttgaag
aacaactgccctcacattgttgttggtactcctggaagaattttagctttggttcgttct
aaaaagttgaatttgaagcatttaaagcatttcattcttgatgagtgtgataaaatgttg
gagctcttagatatgaggcgtgacgttcaagaaatttacagaaacacacctcatggcaag
caagttatgatgttcagtgcaactttgagcaaagaaatccgaccagtgtgcaaaaaattt
atgcaagatcctatggaagtttatgttgatgatgaagccaaactaactttgcacggtttg
caacagcattatgtaaaattgaaagaaaatgaaaagaataagaagctctttgaacttctt
gacgtattggaattcaaccaggttgttattttcgttaaatctgttcaaagatgtgttgct
cttgcccagttattgactgaacaaaacttccccgcaattggcattcacagaaacatgtcg
caagaggagagactttcacgttatcaacagtttaaagattttcagaaacgtatattagtc
gccaccaatctgtttggaaggggtatggatattgaaagagtaaacattgttttcaactat
gatatgcctgaagattcggatacctaccttcacagagtagctagagcaggccgttttggt
accaaaggattagctattacttttgtctcggaagagagcgatgccaaaatcttaaatgaa
gtgcaggaccgtttcgatgtgaacattacagaactacctgatgagattgatctcagttct
tacattgaaggaagatga
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