Coccinella septempunctata (seven-spotted ladybird): 123312494
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Entry
123312494 CDS
T07873
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
cset
Coccinella septempunctata (seven-spotted ladybird)
Pathway
cset03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cset00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123312494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cset03021
]
123312494
03019 Messenger RNA biogenesis [BR:
cset03019
]
123312494
Transcription machinery [BR:
cset03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123312494
Messenger RNA biogenesis [BR:
cset03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123312494
U7-dependent histone pre-mRNA processing factors
123312494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
123312494
NCBI-ProteinID:
XP_044752881
LinkDB
All DBs
Position
4:complement(38162271..38234836)
Genome browser
AA seq
1066 aa
AA seq
DB search
MDSDETSEFADDQTLVQWLNDIGLIESNTDKLEYFFKIQEMLLRKSPNLLPKYLSHVLNF
TTNKSGDLKKALVGFIEELCKMKETYLPIVIVNLYMLLCDECIAVQKRVIQATITIYRRM
LAWLCKATHITEDMNEAWIQLNQIKREIANMIDSDNDGIRTSAVKFLECVILLQTYPDEV
ENRKQNDFSLDDVPLTLKIARRRKLEEEASNLFEVLLKFHNSTHISSANLLTCLGVLTNL
AKTRAEFMSKVVTAIISLYKNLPPTLSTTQVNSVRKKLKTELSGLMKHPGTFDFIDQLTP
ILLDLGCSQSDINRMLPKTEERKRYAKRTLSFESLQLHQPKRQKIDDHVDIDFDDFKEKG
MSPQEVNEKFVSEKLTLQKVIEIVEVTLNKLPDTMPSTFGKDYEKLVKAGSVGNEEITIM
ILANLLTEYGVGPGGRSLESSDTKKRERENDDEKGDEDKAKKEKIKISRMKILKLGEIIK
PLERENKENMLVASVKRLLSCGNIINHALHQKIISTLAACFCPLVKETIITFLINDLRAH
IDIALAWLFEEYSIMQGFSRKPPLRKDAKIDQSYNILLCTLVSTASNDSFILSKILLEAP
LVTEEALDQVKVLCRDENRCEWVLALLKELTLSKPPKQLTFLNVLLLFSTYEQNIVRDCA
LKHILELHKREDLKVIIEEFARMNLEFLKLKRPPEGLCGFNQGRLKSESWGDDFIKACLM
PFISLLPADQALIHDLADIYIQTSADIKRIILRLLDAPIREMGMQSQELLKLMKECSKGS
ETLVTRIIHILTEKEPPSLELVQIVRDLYNSKVSDVRFLIPVLNGLSKKEILTALPKMIK
LNPIVVKEVFNRLLGSHGDSPVSPTELLVSLHTIDSLKADLKTVIKATSLCLQDKQIFSQ
EVMAVVLQQLMEQSPLPTLLMRTVIQALGSYPRLSGFVMNILQRLIIKQVWKQKVVWEGF
VKCCQRTKPQSFAVLMQLPPPQLTEALNMCPELRDPLKEHLLSLTEGQLAHIPSAVKEIL
LNSYRPVGLSTPEQAIINSADSVQNRVVPPPVAAPTVTEPLPPGME
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggattccgacgaaacaagtgaatttgcagatgatcagacgcttgttcaatggttaaat
gatattgggttgatcgaaagtaataccgataagttggaatatttttttaagatacaagag
atgctcctgaggaaatcgccaaatttattacccaaatatctttctcatgtattgaatttc
accaccaataaaagtggtgatctgaaaaaagcactagttggatttattgaagaattgtgt
aagatgaaggaaacatacttaccaattgtaattgtgaatctgtacatgcttctgtgtgat
gaatgtattgctgttcaaaagagagttattcaggcaactataacgatatatagaagaatg
ttagcttggctgtgtaaagctacccatataacagaggatatgaatgaagcttggattcag
ttaaatcaaatcaaaagagaaattgctaatatgatagatagtgataatgatggtataaga
acaagtgcagtcaagttcctggaatgtgttatattgttacaaacttatccagatgaagtg
gaaaataggaaacaaaatgatttctctttggatgatgtaccacttactctcaaaattgca
aggagacgtaaacttgaagaagaagctagcaatttatttgaagttttattgaaatttcat
aattcaacacacattagtagtgccaacttattgacctgcttgggagtattgactaattta
gcaaaaacaagagctgagtttatgtctaaagttgtgactgccatcataagtttgtataaa
aatttaccacctactctcagcactacacaagtgaactcagtacgcaaaaagttgaagaca
gaattaagtggcttgatgaaacatcctggaacatttgatttcatagatcaattgacacct
atattgctggatttgggttgttcacaaagtgatataaatagaatgctcccaaaaacagaa
gaacgcaaaagatatgcgaaaagaactctctctttcgagtcattgcagttgcatcaacca
aaaagacagaaaattgatgatcatgttgatatcgatttcgacgattttaaagaaaaagga
atgagtcctcaagaagttaatgagaaatttgtttctgaaaaattaactcttcaaaaagtg
atagaaattgtggaagttactttaaataaattgccggatactatgccttctacctttgga
aaggattatgagaagctggttaaagctggttctgtgggcaatgaagaaatcaccattatg
attctggcaaacttattaacagaatatggcgttggacctgggggccgttctttagaatca
agcgacactaaaaaaagggagagagaaaatgacgatgaaaaaggcgatgaagataaggcg
aaaaaagagaagattaaaatatctcgaatgaaaatactgaaattgggagaaataataaaa
cctttggagagagaaaacaaagagaatatgctggttgcatcagttaaacgattgttatcg
tgcggaaatattatcaatcatgcactacatcaaaaaattatctctaccttggctgcttgc
ttctgtccgctcgttaaagaaaccattataacattcctcatcaatgacttacgagctcat
attgatatcgcacttgcctggttatttgaggaatacagtataatgcagggattttcaaga
aaaccacctctaagaaaggatgcaaaaattgatcaatcctacaatattttactatgcaca
cttgtgagcactgcttcaaatgactccttcatcctcagcaaaattcttttggaggctcct
ttagtaacagaagaagctttggatcaggtcaaagttttatgtagggatgagaatagatgt
gaatgggttttagcacttctgaaagaacttacacttagtaaaccaccaaaacaattaacc
tttctcaatgttcttctgctgtttagtacctatgaacagaatattgttagagactgtgct
ctcaaacatattttggaattacacaagcgagaagatttgaaagttattatagaggaattt
gcaaggatgaatttggaatttttgaaactgaaaagaccgccagaaggtctatgtgggttt
aatcaaggaagattgaaaagcgagtcgtggggtgacgatttcatcaaggcatgtttgatg
cctttcatttcattacttccagccgatcaagctttaatccacgacctggcagatatatat
attcaaactagtgcagacatcaagaggataatactccgattgttagatgcacccatcaga
gagatggggatgcaatctcaagagttgttgaaactaatgaaagagtgttccaaaggatca
gaaactttggttactaggataattcatattcttacagaaaaagaacctcctagtttggag
ttggtgcaaatagttagagatctatataattccaaagtttctgatgttcggtttttgatt
ccagttctcaatggtttgtcgaagaaagagattttaacagcattaccaaagatgatcaag
ttgaatccaattgtagttaaggaggtgttcaatagacttctgggttcacatggagatagt
cctgtatccccaactgaacttttggtttcacttcatacaattgactctttgaaggcggat
ctcaagactgtcattaaagctacttcattgtgtcttcaggataaacagattttcagccaa
gaggtgatggctgtagtattacaacaactcatggaacaaagccctttaccaactctattg
atgaggaccgtgattcaagctcttggcagttaccctagactttcgggttttgttatgaat
atcctgcagagactcatcatcaaacaggtgtggaagcagaaagtggtttgggaaggtttc
gtaaaatgctgccagagaacaaagccacaaagttttgctgttttgatgcaactgccccct
ccccaactcacagaagctcttaatatgtgcccggagttgagagatcctctgaaagaacat
ttgctctctttgacagagggacaattggcccatattccaagcgcagtgaaggaaatacta
ctcaattcttataggccagttggtttgtccacccccgaacaggctataatcaactctgca
gattctgttcagaatagagtggtaccacccccagtagcagctcctacagtcactgaacct
ttaccacctgggatggaataa
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