Coccinella septempunctata (seven-spotted ladybird): 123312935
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Entry
123312935 CDS
T07873
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cset
Coccinella septempunctata (seven-spotted ladybird)
Pathway
cset03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cset00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123312935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cset03019
]
123312935
03041 Spliceosome [BR:
cset03041
]
123312935
03009 Ribosome biogenesis [BR:
cset03009
]
123312935
03016 Transfer RNA biogenesis [BR:
cset03016
]
123312935
Enzymes [BR:
cset01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123312935
Messenger RNA biogenesis [BR:
cset03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123312935
Spliceosome [BR:
cset03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123312935
Complex C
U4/U6.U5 tri-SnRNP related factors
123312935
Ribosome biogenesis [BR:
cset03009
]
Eukaryotic type
Pre-60S particles
Helicases
123312935
Transfer RNA biogenesis [BR:
cset03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123312935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
123312935
NCBI-ProteinID:
XP_044753460
LinkDB
All DBs
Position
5:complement(25207790..25226328)
Genome browser
AA seq
1015 aa
AA seq
DB search
MTDIDDLFSCFQPSKSEESKEVTPDTENLDERLVQIDLKGVKRESSDDISTSSKKSKHDP
NVVDVKDINFEELKNRIVVHTIESIESCSHEVAYPPCQSFIPLLAPTGEPAKTYNFVLDP
FQKESILCIDNNQSVLVSAHTSAGKTVIAEYAIATSLKKQQRVIYTTPIKALSNQKYREF
MDEFKDVGLVTGDVTINPTASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKER
GVVWEETLILLPHNVHFVFLSATIPNARQFIEWVAHLHQQPCHAVYTDYRPTPLQHFVYP
AGGTGIHMVVDENGIFKDENFNVAMSVLQDSGDAAKGDQKGRRGGISNKNATECDIFKVL
KMIMDRNFAPCIVFSFSKKECELYATQMTKLDFNTAAEKQLIDEVFNNAMNVLSDSDRML
PQVQHLLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLF
TGMRKFDGQQYRWLTSGEYIQMSGRAGRRGLDDKGIVIFMVDEKVPPEGCRDIVKGSPDP
INSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQTAIPGLHKEYERRLQEYNNFKID
NEEQIASYYDIRQQLDKLVIDFRKYLTNYESLLPFLQPGRLVKIKTADAEYDWGIVVNYK
VTKAQGKRQEKAKCQIDMLLHVTLSSEDDFPKPAVNEEQGEFEVVAVDSKFITHLSSVRL
YCPNDLRTKDSRKSVRKSLKEVKKRFPDGPPQLDPVKDMKINDPEFLKIIDKIGSLEKEM
KDHPLHETEELNSCYKKYEEKMNIRSKLELAKTKLLEAKSVLQLDELKCRKRVLRRLGYC
TNTDVIQLKGRVACELSSADELLLTEMLFSGIFNPLTPAEVCALLSCFVCDEKSNEKDEY
PKQLILQMQDIARRIAKISTEARLPLDEQAYIDKFKTSLYHIVHQWCKGASFSDLCRSTE
IYEGSIVRCMRRLEELLRQMVQASKTIGNKDLEDKFNEAIKSIKRDIVFSASLYL
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgacagatattgatgatttatttagttgtttccaaccaagcaaaagtgaagaatcaaag
gaagttacaccggatactgaaaatctcgatgaaaggcttgtccagattgatttgaaagga
gttaaaagggaaagtagtgacgacattagtacatcttcaaaaaaaagtaaacatgaccct
aatgtggtagatgtcaaagatataaattttgaagaattgaaaaacaggatagtggttcac
acaatagaatcgatagaatcatgttcacacgaagtagcttatcctccatgccagtcattt
attcctctcttggcgccgacgggggaaccagcgaaaacctacaatttcgttctagatcct
tttcagaaggaatctattttatgtattgacaacaatcagtctgtgctcgtttctgcacat
acatctgcagggaaaacagtgatcgctgagtatgccattgctacatcattaaaaaaacaa
cagagggttatttatacaacacccataaaagctctgtctaatcaaaaatatagagaattc
atggatgaatttaaagatgtgggcttagtaacaggggatgttacaataaatccaactgcc
tcatgcttgataatgacgacagagattctccgtaatatgttatataggggctctgaaata
atgagagaagttggatgggtgatatttgacgaaattcactacatgagagacaaagagaga
ggtgttgtttgggaagagacattgattttgcttcctcacaacgtacattttgtgttcctc
tctgctaccataccaaatgctagacagtttatcgagtgggtagcacatttacatcaacag
ccatgtcatgctgtgtatacagattatcggccaacaccactgcaacattttgtttatcca
gctggaggaactggaattcatatggtagtcgatgaaaatggtatattcaaagacgaaaat
ttcaatgtagcaatgtcagttttacaagattctggtgatgcggccaaaggtgaccagaaa
ggaagaaggggcggtattagcaacaagaatgctactgaatgtgacatcttcaaagtactt
aaaatgataatggatagaaattttgcaccttgtatagttttcagtttttcaaaaaaagaa
tgtgagctttatgctacccagatgaccaaacttgattttaatacagcggccgaaaaacaa
ctgattgatgaagtcttcaataatgcaatgaatgttctgtccgacagtgacagaatgtta
cctcaagttcagcatctgttacccttgctgagaagaggtataggtattcatcatgggggt
ttattacccattctaaaagaaactatagagattctatttggtgaaggtctcattaaagca
ttattcgcaacagagactttcgcaatgggcttgaacatgccagctcgaaccgtacttttc
acaggaatgaggaagtttgatggccagcagtatagatggctcacttctggcgaatatatt
caaatgtctggtagagcgggaaggagaggtttggatgacaaaggtatagtcatattcatg
gtagatgagaaggtacccccagaaggctgtcgtgacattgtgaaaggctcgccagatcct
ataaattcagcgttccatctaacttataacatggttctcaatcttcttcgggtagaggaa
atcaatcccgagtatatgttggaaaggtcattctaccaattccagaaccagactgctatt
ccaggtttacacaaagaatatgaaagaagacttcaagaatataacaatttcaaaattgat
aatgaagaacaaattgcttcatattatgacatacgacaacaactggataaattagtcatt
gactttagaaaatatctgacaaattatgagagtttactcccgtttctacaacctggaaga
ttagtcaagatcaaaactgctgatgcagaatatgattggggtatagtggtgaattataaa
gttactaaagctcaaggaaaaagacaggagaaagctaagtgccagattgatatgctcctc
cacgtcacactcagctctgaagatgacttccccaagccagctgtgaatgaagagcaagga
gaatttgaagttgttgctgttgattcgaaattcataacccacctatcctctgtacgatta
tactgtccgaacgatttgaggaccaaagactctagaaaaagtgttaggaaatccttgaaa
gaggttaaaaaacgatttcctgatggccccccacagctggatcctgtgaaagatatgaag
attaatgatcctgagtttctgaagataatagacaagattggatctctggagaaagagatg
aaagatcacccattgcacgaaaccgaagagcttaactcgtgttacaaaaagtacgaggaa
aaaatgaacatccgatcgaagttggaactagccaaaacaaagctgctcgaggccaagtcc
gttttgcaactggacgagctcaagtgtcgcaaacgtgtcttgaggcgactaggctattgc
acgaacaccgacgttatacagctgaaaggtcgggtggcctgcgagctgagcagcgcggac
gagctgctcctgaccgagatgctgttcagcggcatcttcaaccccttaacaccggcggag
gtgtgcgcattgttgagctgtttcgtgtgcgacgagaagagcaacgaaaaggacgagtat
ccgaaacaactcatcttacagatgcaggatatcgccagacgaatagccaagatcagtacg
gaagctcgattgcctttggacgaacaagcttacattgacaaattcaagacatctctttac
cacatagttcaccagtggtgtaaaggcgcgagtttcagcgatctatgtagatcaaccgaa
atttacgaaggttcgatagtacgttgcatgaggagattggaggaacttttgaggcagatg
gtacaggcctcgaaaaccattggaaataaggacttggaggataaatttaacgaggccatt
aaatcgatcaaaagagacattgttttttcggccagcttgtatctctaa
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