Coccinella septempunctata (seven-spotted ladybird): 123313909
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Entry
123313909 CDS
T07873
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cset
Coccinella septempunctata (seven-spotted ladybird)
Pathway
cset03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cset00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123313909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cset03019
]
123313909
03041 Spliceosome [BR:
cset03041
]
123313909
03009 Ribosome biogenesis [BR:
cset03009
]
123313909
03016 Transfer RNA biogenesis [BR:
cset03016
]
123313909
Enzymes [BR:
cset01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123313909
Messenger RNA biogenesis [BR:
cset03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123313909
Spliceosome [BR:
cset03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123313909
Complex C
U4/U6.U5 tri-SnRNP related factors
123313909
Ribosome biogenesis [BR:
cset03009
]
Eukaryotic type
Pre-60S particles
Helicases
123313909
Transfer RNA biogenesis [BR:
cset03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123313909
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
123313909
NCBI-ProteinID:
XP_044754948
LinkDB
All DBs
Position
5:complement(25227078..25232392)
Genome browser
AA seq
1003 aa
AA seq
DB search
MDIDDLFDCFNQVTKIEVAKDSQGSKRPRNDTPDETESPKKAKLDSEDLEQFKQILSEEL
KNRVVVYSLDTIDSCSHEVAYPSKQAAVPLVASQGEPAKKYKFVLDPFQKESILCIENNQ
SVLVSAHTSAGKTVIAEYAIALCLKNKQRVIYTSPIKALSNQKYREFNDEFKDVGLMTGD
VTINPTASCLIMTTEILRNMLYKGSDVIREVAWIIFDEIHYMRDKSRGVVWEETLIMLPH
NARFVFLSATIPNAKQFIQWISHIHQQTCHVVYTDYRPTPLQHYLFPAGGSGIHMVVDEN
GTFQEDNFNGAMTELQNAGEAAKGDQKGRKGGVRNKDATQTDIYKMVKMTVERNFAPVIV
FSFSKKDCELYAKQMTKMDFNTTSEKLAVDEIFNNAIQVLSEEDQDLPYIKHMIPLLRRG
IGIHHGGLLPVIKETVEILFGEGLIKVLFATETFAMGLNMPARTVIFTDMRKFDGQKHRW
VTSGEYIQMAGRAGRRGLDDKGIVISMINEKVPSAACRSIIKGLPDPLNSAFHLTYNMVL
NLLRVEVIDPDYMLEKSFFQFQNQTEIPRLFDDYEAKLEKYNEFEIENEPEVESYHVLKQ
QLETLYIQTRKFMLEPKVLGRFLKNGRVMKVSTPEGEYDWGIVVGCKWLKNGKKKDKKVE
IDMLLNVIQDDESDSNKPALLEDKDGQMEIIPVDSSYVTHISSGRCNFSGDWKSKEIKKM
IKPWLRKLKEDHPDGIPLLDPVKDMKINDPSLTDIMDQIAKIQDKIKKHPFAKHPSMKEI
YKKYKEKINCQSELEEVRIKLLDAKKIIQMDELKCRKRVLRRLDYCTKEDVIELKGRVAC
ELSSADELLLTELLFNGVFNNLTPAEATALLSCFVCTEKSDKPPKIRESLNGPFRQMQDI
ARRIAKVNAECRLTVDEETYVQSFRPFLMDIVYRWCNGASFRDLLDPDIYEGSVIRCMRR
LEELLRQMVQASKVIGNHELEDKFEDGIKMIKRDIIFAASLYL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgatgaccttttcgactgtttcaatcaagttacaaaaattgaagttgcgaag
gattcacaaggttctaaaaggccaagaaatgatactccggatgaaactgaatcaccaaaa
aaagccaaattagattctgaagatttggaacaattcaaacaaattctctctgaagaattg
aagaatagagtggtcgtttatagtttagacacaattgactcctgctcccatgaagtagct
tatccttccaaacaagcagcagtccctcttgtggcttctcaaggggaaccagcaaagaaa
tacaagtttgttttggatccttttcagaaagaatctattttatgtattgaaaacaatcaa
tcagttcttgtttctgcccatacatctgctggaaaaactgtcattgcagagtatgcaata
gctttatgtctgaaaaataaacagagagtaatttatacaagtcccattaaagcactgtca
aatcagaagtatcgagaatttaatgacgaatttaaggatgttggattgatgactggagac
gttacaattaatccaacagcatcatgcttgatcatgacaacagagattttgcgaaatatg
ttgtacaaaggatctgatgttatcagggaggttgcctggattatttttgatgaaatccat
tatatgagagataaaagtagaggggtagtttgggaagagactttgattatgctaccacat
aatgcacgttttgtgtttctttctgctaccattcctaacgctaaacagtttatacagtgg
atttcacatatacatcaacagacctgtcatgttgtttacacagattataggccaacacct
ttacaacattacttgtttccagctggtggtagtggaattcatatggtagttgatgaaaat
ggaactttccaagaagataacttcaatggggcaatgacagagttgcagaatgccggtgaa
gcagcaaaaggtgatcaaaaaggcagaaaagggggagttagaaataaagatgccactcaa
accgatatctataagatggtgaagatgacagtagaaagaaattttgcacctgtcattgtt
tttagtttttcaaagaaagactgtgaactttatgcaaaacagatgaccaaaatggatttc
aataccacttctgagaaattagctgttgatgagattttcaacaatgccattcaagttctt
tctgaggaagaccaagatttaccatatattaagcatatgattcctctgctgagaagggga
ataggcattcatcatggaggattacttccagttattaaagaaacggttgagatattattt
ggtgaaggtcttatcaaagttttattcgcaactgagacctttgctatgggattaaacatg
cctgccagaactgttattttcactgatatgagaaaatttgatgggcaaaaacatagatgg
gtgacatctggagagtacatacagatggctggtagggcaggtagaagaggtttggacgat
aaaggtattgtcatatcaatgataaacgagaaagtaccttctgcggcatgtcgtagtata
atcaaaggtttacctgatccgctgaattccgcattccatttgacttacaatatggttctc
aatctgctacgagttgaagtaatcgatccggattatatgctggaaaaatcttttttccaa
ttccaaaaccagactgaaattcctcgtttatttgacgattatgaagcaaaactggagaaa
tataatgaatttgagatagaaaatgaaccagaagtcgagtcatatcatgttctgaagcaa
cagctggagacattgtacatccagaccagaaaattcatgttggaacctaaagtattggga
cgtttcttgaaaaacggtagagttatgaaggtatcaactcctgagggtgaatatgactgg
ggtatagtagttggctgtaagtggctaaaaaatggcaaaaaaaaggacaaaaaggttgaa
attgatatgctccttaatgttattcaagacgatgaaagtgatagtaacaaaccagctctt
cttgaggataaggatggtcaaatggaaattattcctgtagattccagttatgtaacccat
atttcttctggtagatgcaatttttcaggagactggaaaagtaaggaaatcaaaaagatg
ataaaaccttggctgaggaaactcaaggaggatcatccagatggtattccattgctggat
cctgttaaagatatgaaaataaatgatcccagcctcactgatatcatggatcaaattgca
aaaatacaagacaagattaaaaagcacccattcgccaagcatccttcgatgaaagaaata
tataaaaaatataaagagaaaatcaactgtcaatcagaattggaggaagttaggataaaa
ttgctggatgccaagaagattatacaaatggacgagcttaaatgccgcaaaagagtattg
aggaggcttgattattgtacaaaagaggatgtcatcgagctgaaaggcagagtggcttgc
gaattgagcagtgcggatgagcttcttctgacagaactactattcaacggtgtgttcaac
aaccttaccccagctgaggcaactgcactcctgagctgttttgtttgcaccgagaaatcg
gacaagcccccaaaaatcagggaaagtttaaatggccccttcaggcagatgcaggacata
gcccgaagaatagccaaagtcaatgcagaatgtcggttgacagttgatgaagaaacttat
gtacagtctttccgcccgtttctgatggatatagtgtacaggtggtgtaatggagcttcc
ttcagagatcttttagatccagatatttacgaaggttcggttattcgctgcatgaggcgt
ttggaggaacttttgaggcagatggtgcaagcctccaaagtaattgggaatcacgagttg
gaagataagtttgaagatggaattaaaatgatcaagagggatatcatatttgcagccagt
ttatatttgtaa
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