Coccinella septempunctata (seven-spotted ladybird): 123314855
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Entry
123314855 CDS
T07873
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cset
Coccinella septempunctata (seven-spotted ladybird)
Pathway
cset03013
Nucleocytoplasmic transport
cset03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cset00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123314855
03015 mRNA surveillance pathway
123314855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cset03019
]
123314855
Enzymes [BR:
cset01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123314855
5.6.2.5 RNA 5'-3' helicase
123314855
Messenger RNA biogenesis [BR:
cset03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123314855
mRNA cycle factors
Common to processing body (P body) and stress granule
123314855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
SRP54
nSTAND3
AAA_22
AAA_16
nSTAND_NTPase5
AAA_32
AAA_7
AAA
AAA_10
AAA_5
YkyA
Motif
Other DBs
NCBI-GeneID:
123314855
NCBI-ProteinID:
XP_044756180
LinkDB
All DBs
Position
6:complement(33343602..33350613)
Genome browser
AA seq
1098 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEDADLIGADTQGSECEFTDFTIPSQTQASQIEHTTKTPKITG
LQVNNDIGSKIASAANALGELQFEEEDEEYFNSKELPDYACKYCGIHEPNCVVMCNCCKK
WFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGVRNVFVLGFIPAKAD
SVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLTWLVKVPSEQEQLRARQITAQQI
NKLEELWKDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKE
SQTQENIEVRWDIGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEMHKPWAGVGHVIK
VPDNYGEDIGIELKNNNGVPSDCNSNFVVDFIWKSTSFDRMQLALRKFAVDDTSVSAYIY
HRLLGHDVEDVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTS
ATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKTNLKVVRLCAKSREAIDSPVSFLALH
NQIRKMEGNTEQQKLQQLKDETGELSSVDEKRYRMLKKLAEKELLEAADVICCTCVGAGD
PRLTRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQ
SLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCANERKLKIEFPWPIAE
RPMFFHVTQGQEEIAGSGTSYLNRTEASNVEKIATKFLKAGVKPEQIGIITPYEGQRAYL
VQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVAL
TRAKYGIIIVGNPKVLSKQPLWNHLLSFFKEQKVLVEGPLTNLKESLIQFAKPKKLVNSE
NPGSHFMTTSVFDAREAIIPGSVYDRTNTAINGQYNYPRGAVPLDMFSRTHDPISYISQD
RSQTSMNLPVPVGMFMNMAHIPPRFYNQHQQALQARQQQQNPRNRKPPQRQKGGKTLSQD
QTTQPFSQSLQLTQGMSQPGLSQPGFSLSQPGLSQAELSQDPYMIEYQSQMDGLLSQDST
YQGDRSFYQPNAQFSQPY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcgtatggacctagttcacaaacactcacttttttggataccgaagac
gctgatttgataggtgctgatactcaaggttcagaatgtgaatttaccgatttcaccatt
ccgtcccagacccaggcatcacagatcgagcacacgacgaaaacgcctaaaattacgggc
ttacaggtgaataacgatatcggaagtaaaatagccagtgctgctaatgctctaggcgaa
cttcaatttgaggaggaagatgaagaatatttcaatagtaaagaattacctgactatgct
tgcaagtattgtggaatacatgaacccaactgtgttgttatgtgcaattgttgtaagaag
tggttttgcaatggacgtgggaacacttctggtagtcatatcattaatcacttggtgagg
gctaagcacaaggaagttactctacataaggacggtccgttaggagaaacaatattggag
tgctatagttgcggagtccgaaatgtatttgttttgggtttcattcctgctaaagccgat
tcagttgttgtgctattatgcagacagccatgcgctgcacaaaattctttaaaggatatg
aattgggatcaagagcaatggaaacctttgattgctgacagatgttttctcacgtggttg
gttaaagttccttccgaacaggaacaactcagagctcgtcagattaccgcacaacaaatc
aataaactcgaggaactttggaaagataatgtcgatgctactttccaagatcttgagaaa
ccgggagtggacgaagaaccacagcaggttttgctacgttacgaggacggttatcaatac
cagaacatattcggtcccttggtaaaactagaggctgattatgataagcgcctgaaagag
tcgcagacgcaagaaaacatcgaagtgaggtgggacattgggctgaacaagaaaactatt
gcctatttcacactggccaagaccgatggagacatgaaattgatgcatggcgacgagctg
aggctgagatatgtgggggagatgcacaaaccttgggcgggtgttggacacgtgattaag
gtgcccgacaattacggagaagatattggtatcgagctgaagaacaacaatggagttcct
tcggactgtaacagtaattttgtggtcgacttcatctggaagagtacgagtttcgacagg
atgcagctggcgcttcgcaagttcgccgtcgacgacacctccgtgtccgcctacatctac
cacaggctgctcggacacgacgtcgaagacgtcctgttccgttgtcatcttcccaagcat
ttttcggcccccaatctgcccgacctgaaccgttcccaggtgtacgcggtcaagcacgcc
ctgcaacgtcccctgtcgctcatacagggccccccgggcaccggcaagaccgtcacctca
gcgaccattgtctaccagctggtgaagcagaacggcgggccggtgctggtctgcgcgccc
agtaacacggccgtcgaccagctgacggagaagatccacaagacgaacctgaaggttgtc
aggctgtgcgccaagtctcgcgaggccatagactccccagtcagcttcctggccctgcac
aaccagatcagaaagatggagggcaacacggaacagcagaaactgcaacagctgaaggac
gagacgggcgagctgagctcggtcgacgagaagcgatacaggatgctgaagaagttggcc
gagaaggaactgcttgaggcggccgacgtcatatgctgcacctgcgtgggcgcgggcgat
cccaggctgaccagattgaagtttcactcgatactgatcgacgaaagtatgcaggccacc
gaacccgagtgcatggtacccgtcgtgctcggagtcaagcagctcatcttggtcggcgat
cattgccaactgggaccggtcgttatgtgcaagaaagcggctagggcgggactgtcccag
agcctgttcgaacgtctcgtcgtgctcggcatcagacccttccgtttggaggtgcagtac
aggatgcacccggaactgtcgaggttcccgtccaatttcttctacgagggaagtctgcag
aacggcgtgtgcgccaacgagaggaagttgaagatcgaattcccttggcccatcgccgag
aggccgatgttcttccacgtgactcagggacaggaagagatagccggttccggaaccagt
tatctcaaccggaccgaagcgtctaacgttgagaaaatagccaccaaattcttgaaggcg
ggggttaagcctgagcagattggaataattactccgtacgaaggacagagggcttatctg
gtgcaatatatgcaatatcagggatcgttgcacagcaaactgtatcaggagatcgaaatt
gcgagcgtggatgcgtttcaaggtcgggagaaagacataatcatcatgtcttgcgtcagg
tccaacgagcatcaaggaatcggttttctgaacgatccgcgtcgtctcaacgtggccctg
acccgcgcgaaatacggcataatcatcgtgggcaaccccaaggtcctatccaagcaaccc
ctctggaaccacctcctgtccttcttcaaggagcagaaggtcctggtcgagggtccgctg
accaacctcaaggagtcgctgatacagttcgcgaaaccgaagaaactggtcaattccgag
aatcccggctcgcacttcatgaccacctcggtcttcgacgccagagaggctataataccg
ggttcggtgtacgacaggaccaacaccgcgatcaacggccagtacaactaccctaggggc
gcggtgccgctcgacatgttcagcaggacccacgatccgatcagttacatcagccaggat
cgcagccagacgagcatgaacctgccggtgccggtcggtatgttcatgaacatggcccac
attccgcccaggttctacaaccagcatcagcaggctctacaggctagacagcaacagcag
aatccgaggaatcgcaaacctccgcagaggcagaagggcggcaagacgttgagtcaggac
cagaccacgcagccgttcagccagagcctgcagctgacgcagggcatgtcgcagccgggt
ctgtcgcagccagggttcagcctctcgcagccgggactgagtcaggccgagctcagtcag
gatccgtacatgatcgagtatcagagtcagatggacgggttgctgtcgcaagactccacc
tatcagggggataggtcgttctatcagccgaatgctcagttttcccaaccctactga
DBGET
integrated database retrieval system
