Coccinella septempunctata (seven-spotted ladybird): 123318464
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Entry
123318464 CDS
T07873
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cset
Coccinella septempunctata (seven-spotted ladybird)
Pathway
cset03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cset00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123318464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cset03019
]
123318464
03041 Spliceosome [BR:
cset03041
]
123318464
Messenger RNA biogenesis [BR:
cset03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123318464
Spliceosome [BR:
cset03041
]
Complex B
Other components
Prp19-related factors
123318464
Complex C
123318464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_15
NRDE-2
TPR_8
TPR_10
ARM_TT21_C
PPR
ARM_TT21
DHR-2_Lobe_A
TTC7_N
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
123318464
NCBI-ProteinID:
XP_044761023
LinkDB
All DBs
Position
8:31491967..31494667
Genome browser
AA seq
844 aa
AA seq
DB search
MGMEINRVPSKKDVEPMDIEFGDEDLPYEEEILRNPHSVKHWLRYIEHKKKSPKFEINLI
YERALKQLPGSYKLWYNYLRARRIQVKRRCITDPLYEEVNNAFERALVFMHKMPRIWIDY
CVFLTGQCKITRTRKVFDRALRALPITQHNRIWPLYLNFVKKFPIPETAVRVFRRYLKLF
PENAEEYIEYLKSISRLDECAKLLAKIVNDENFVSREGKSKHQLWNELCELISQNPKEVV
SLNVDAIIRGGLRRYTDQVGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQIF
DAYAQFEELSLGKKTEEAAKNPNPTDDEDIDLRIARLERLYERRLLLLNSVLLRQNPHNV
EEWHTRVKLYEGKPHEIINTYTEAVQTVNPKFAIGKFHTLWIEFAKFYEKNDQIDDARLV
FEKGTQVPFVKVDDLAAVWCEWAEMEIRNDNYEMALKLMHKATTIPSQKASYFDDSETVQ
NRLYKSLKLWSLYADLEESQGSFKSCKAVYDRILDLKIATPQIIINYGLFLEEHNYFEEA
FRTYEKGVSLFKWPNVYDIWNTYLLKFLKRYGGEKLERARDLFEQCLEKCPPEFAKNIYL
LYAKLEENHGMARHAMSIYERATSAVLPSEVFDVFNIYLKRAAEIYGISKTRQIYEKAIE
VLPEDKTIAMCKKFAEMETKLGEIDRARAIYAHCSQICDPRVTTEFWQIWKEFEIKHGNE
DTMREMLRIKRSVQAMFNVQVNMMSAQMITSANSGASTVADLAPGANDGMRLLEAKAAEM
AGMTTANPGLNKIMFVRGETQGSREEKVVNPDEIDIGDSDSEEETESPVKQDVPAQIFGS
LNIK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgggaatggaaatcaacagagtaccttcgaaaaaagatgtggaacctatggatattgaa
tttggggatgaagatttgccgtacgaagaagaaatattgagaaatccccattctgtgaag
cactggttgagatatattgaacataagaagaaatcacctaaattcgaaataaatttgatt
tatgaaagagcgttgaaacagttgcccggttcgtacaaattatggtacaattacctacga
gctaggagaatacaagtaaagagaagatgtatcactgatccactctatgaggaagtgaac
aatgcctttgaaagagctcttgtttttatgcataaaatgcctagaatatggatagattat
tgtgttttcttgacaggacaatgtaaaataactaggaccagaaaagttttcgatagagcg
ctcagagctctaccaataactcaacataatagaatatggccattatacttaaattttgtc
aaaaagttccctattccagaaacagctgtaagggtattccggagatatctgaagttattt
ccagaaaatgctgaagaatatattgaatacttgaagagtatttcaagattagatgaatgt
gcgaaactcttagctaaaatagtgaatgatgagaattttgtgtctcgagaaggaaaatcc
aaacatcagctttggaacgaattatgtgaattgatttcacagaatcctaaagaggtggta
tctttgaatgtcgatgctataatacgaggtggattgaggaggtacacagatcaagtaggt
catttatggaattcgcttgctgattattatgttcgaagtgggttattcgaaagagctagg
gacatctatgaggaggccatccaaactgttactactgtcagggatttcactcaaatattc
gacgcttatgctcaatttgaagaattgagtttggggaagaaaacagaggaagctgccaag
aatccaaatcctaccgatgacgaagatatagaccttagaatagcaaggttggaacgttta
tatgaaagacgattactcctactcaattccgttttactcagacaaaatcctcataatgtt
gaagaatggcacacccgagttaaactttacgaaggaaagcctcatgaaattatcaacact
tatacagaagccgtacaaacggtgaatccaaaattcgccatcggtaaatttcacacgcta
tggatagaattcgccaagttttacgaaaaaaatgatcaaatcgatgatgctagactagtg
tttgaaaaaggaactcaagtacctttcgttaaagtcgacgatttggcagcggtttggtgc
gaatgggctgaaatggaaatcagaaatgacaactatgagatggctttgaaattgatgcat
aaggctaccaccataccgtcccagaaagcttcttatttcgatgactccgaaactgtccaa
aatagactgtataaatcgcttaaattgtggtcgttatacgctgatttagaggagagtcag
gggtctttcaagtcttgtaaggctgtctatgatagaatactggacctgaaaattgctacg
ccccaaataataataaactacggtttgtttttagaggaacataactatttcgaagaggct
tttagaacgtacgagaagggagtttcgttattcaaatggcccaatgtttatgatatatgg
aacacgtatttgctgaaattcttgaagaggtatggtggggagaaattagagagagcgaga
gatctgttcgagcaatgtttagaaaaatgcccaccagaattcgcgaagaacatctattta
ctgtacgctaaactagaagagaatcatggtatggccagacatgcgatgagtatctacgaa
agggcaacaagtgcagtattaccatcggaagtgtttgacgtgttcaacatttacctgaag
agagcagcagaaatctacgggatttcgaaaaccaggcaaatctacgagaaagccatcgaa
gtcctgccagaagataaaaccatcgcgatgtgcaagaaattcgcggaaatggagaccaag
ctgggtgaaatcgacagggcgagggccatctacgcccattgcagccagatctgcgatccc
agggtgaccacggaattctggcagatatggaaggagttcgaaatcaagcacggcaacgag
gatacgatgagggagatgctgaggataaagagaagcgtgcaggccatgttcaacgtccag
gtgaacatgatgtccgctcagatgatcacctcggcaaacagtggagccagcactgtggct
gatttggcaccaggtgccaatgatggcatgcgtttattggaggccaaagcggcggaaatg
gctggtatgacgacggccaatccaggactcaataagattatgttcgttaggggagagacg
caagggagtagggaagaaaaggttgttaatcctgatgagattgatatcggggacagtgat
tctgaggaagaaactgagtcccctgttaaacaagatgtacctgctcagatcttcggcagt
ttgaacattaaatga
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