Coccinella septempunctata (seven-spotted ladybird): 123318960
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Entry
123318960 CDS
T07873
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cset
Coccinella septempunctata (seven-spotted ladybird)
Pathway
cset03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cset00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123318960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cset03041
]
123318960
03009 Ribosome biogenesis [BR:
cset03009
]
123318960
Enzymes [BR:
cset01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123318960
Spliceosome [BR:
cset03041
]
Complex A
U2 snRNP components
U2 related factors
123318960
Complex B
123318960
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123318960
Ribosome biogenesis [BR:
cset03009
]
Eukaryotic type
90S particles
Helicases
123318960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
AAA_25
ATPase
Flavi_DEAD
ABC_tran
T2SSE
AAA_7
AAA_30
AAA_16
TsaE
Motif
Other DBs
NCBI-GeneID:
123318960
NCBI-ProteinID:
XP_044761678
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All DBs
Position
8:22035606..22044773
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AA seq
715 aa
AA seq
DB search
MSKRRIEVMDPFIKKKREERGIPTTTTGSTSTSALTNPYTGLPYTQKYHELFRKRIGLPV
FEYKADFMRLLAEHQCIVLVGETGSGKTTQIPQWCVEYARSVGTKGVSCTQPRRVAAMSV
AQRVSEEMDVALGQEVGYSIRFEDMSSAKTILKYMTDGMLLREGMSDPMLEGYQCILLDE
AHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFDNAPLMTVPGRTHPVEI
FYTPEPERDYLEAAIRTVIQIHMCEEVPGDILLFLTGQEEIEVACKRIKREIDNLGPEVG
ELKCIPLYSTLPPNLQQRIFEEAPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGF
AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAFKNEMQDNTYPE
ILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGAV
MAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADDAKMRFAHID
GDHLTLLNVYHAFKQSMEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRTSTDFT
SKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCLDHKPEWVIYNEFVL
TTKNYIRTVTDIKPDWLLKIAPQYYDLNNFPQCEAKRQLEIIQQRMDSKQYQQGF
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacgtagaatagaagtgatggatcctttcattaagaaaaaaagggaagaaaga
ggaatacctactacaaccacagggagcacatcaaccagtgctttaactaatccatataca
ggactgccttacacccaaaaatatcatgaattgttcaggaagcgcattggcttacctgtt
tttgaatacaaagcggattttatgaggttattggctgaacatcaatgtatcgtattggtg
ggtgagacaggttctggtaaaactacacaaatacctcagtggtgtgtagagtacgctagg
tctgtgggtactaaaggagtgtcttgtacgcaaccaaggagggtggcagcaatgtctgtt
gcccagcgtgtgtctgaagaaatggacgtagctctaggccaggaagttggttacagtatt
cgttttgaggacatgtcgtctgctaaaaccatcttgaagtatatgacagacggtatgctt
ttgcgagaaggaatgagcgatcctatgcttgaaggttatcaatgcatattactggatgag
gctcatgaaagaaccttagccacagacatacttatgggtgttttgaaggaggttatcaaa
cagagatcagatttgaaattggttatcatgtctgccactctagatgctggaaaattccag
cagtacttcgataatgccccgctgatgacggtccctggtagaactcatccggtcgaaatt
ttctacactcccgaaccagaacgtgactatttagaagcagctatcagaaccgttattcaa
attcatatgtgcgaagaagttccgggtgatattttactgtttttgacaggacaggaagaa
atcgaggtagcttgcaagagaatcaaaagagaaatcgataatctaggcccggaagtgggg
gaactaaagtgtatacctctgtattccaccctacctcctaatctccaacagaggattttc
gaagaagccccgccaaataaacctaatggggccatcggacggaaggtggtggtgtcgaca
aacatcgcagaaacttccttgaccattgacggagttgtgtttgtgatagatcccggcttc
gccaaacagaaagtctacaatcctaggattcgtgtagagtcattgcttgtttcgccaatt
agtaaagcttccgctcaacagagagccggtcgtgctggtcgtacgcgtccaggtaaatgc
ttcagactctacacggagaaggctttcaaaaacgagatgcaggacaacacatatccggag
atattgaggtcgaaccttggctctgtcgtgctacaactcaagaagctcggcatagacgat
ctggtccatttcgatttcatggatcctccagctccggaaaccctgatgagggccctggag
ctgctcaattacctggccgccttggatgacgacggcaacctcaccgacctgggggctgtg
atggcggagttccccctggacccgcagctcgccaagatgctgatagccagttgcaaccat
aactgctccaacgagatactgtcgatcacagccatgttgtcagtcccgcagtgtttcgtc
agaccgaacgaggccaagaaagcagccgacgacgccaaaatgaggttcgcgcacatcgac
ggcgaccatctcaccctgctgaacgtctaccacgccttcaaacaaagtatggaagatcca
caatggtgctacgataacttcgtcaattatcgttccctcaaatcggccgataacgtccga
caacagctttcccgtattatggataggttcaatcttaaaaggacctcgacagatttcacc
agcaaagattattacataaacatcaggaaagcgttggtcaatggattctttatgcaggtc
gcacatttggagaggaccggtcattatttgaccatcaaagataaccaaatagttcaattg
cacccgtccacttgcctagaccacaaacccgaatgggtgatttacaatgagttcgtgctg
acaactaaaaattatataaggaccgtaacagatataaaacctgattggttgttgaagatc
gcccctcaatactacgatttgaacaatttccctcagtgcgaggccaaacgtcaattggaa
ataatacaacagaggatggattccaaacagtatcaacagggtttctaa
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