Coccinella septempunctata (seven-spotted ladybird): 123322082
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Entry
123322082 CDS
T07873
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cset
Coccinella septempunctata (seven-spotted ladybird)
Pathway
cset03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cset00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123322082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cset03041
]
123322082
Enzymes [BR:
cset01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123322082
Spliceosome [BR:
cset03041
]
Complex C
Other components
Step II factors
123322082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
Flavi_DEAD
AAA_24
AAA_30
AAA_16
ResIII
T2SSE
AAA_7
PhoH
Sigma54_activat
cobW
ATPase
Motif
Other DBs
NCBI-GeneID:
123322082
NCBI-ProteinID:
XP_044765861
LinkDB
All DBs
Position
1:complement(53052878..53069670)
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AA seq
1201 aa
AA seq
DB search
MSQEDDNIHVLEGSSNQKGGLIVKKSTTTPTFKVPQRSLLGLDKLAAAKRKEREENADKK
ISLNPEDGSKKVSGDSRNFRIPQSETPTYTGGVTEEARKRLLDRLDTTKWKERGVYASSK
ESKRRSSNYDEKSESRNEKRYEHRDSRKHRDSERRNNHDDSERSDRRSSRREFRFRDEPG
TPDLRVKSDVSKTAWEEEDTGYQPRKSSWDYPTPSLYKRQEGSWSERSHQSRRHDYYSER
DNRKTKKSKYDDDTPKPTPAHRYNSWMNDRKRTGATPGVSQEAKVKWDATVDREAWEEEQ
RRIDREWYNIDEGYDDENNPFSSISEEYTKKKEEQLEQRRKKRLSAQQRQINKDNELWER
NRMLTSGVVHSVVFNEDYDEDTLDRVHLLVHNIVPPFLDGRIVFTKQPEPVIPVRDPTSD
MALLARKGSHLVRVFREQKEKRKAQKKHWELGGTKIGNIMGIKKKEDEEDKRYNKDDDTA
DYKTDQKFAEHMKTQEGTSDFSRKKTITEQRRFLPVFAVRQELLNVIRENSVVIIVGETG
SGKTTQLTQYLHEDGYSKFGMIGCTQPRRVAAMSVAKRVSDEMGTQLGDEVGYAIRFEDC
TSENTVIKYMTDGILLRESLREAELDHYSVIIMDEAHERSLSTDVLFGLLREIVAKRHDL
KLIVTSATMDSSKFSTFFGNVPTFTIPGRTFPVETLFSKNPVEDYVDAAVKQALQIHLQP
PSGDILIFMPGQEDIEVTCEVLAERLAEIDNAPELSILPIYSQLPSDLQAKIFQRSPDGI
RKCVVATNIAETSLTVDGIIFVIDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAG
RTGPGQAFRLYTERQYKEELLITTVPEIQRTNLANTVLLLKSLGVQDLLQFHFMDPPPQD
NILNSLYQLWILRALDHTGMLTKLGRQMAEFPLDPPQCQMLIVSSQMGCTAEILIIVSML
SVPSIFFRPKGREEEADGVREKFQVPESDHLTFLNVYNQWKQNGYSSHWCNEHFIHIKAM
RKVREVRQQLKDILIQQKLDIQSCGTDWDIIRKCICSAYFHQAARLKGIGEYVNCRTGMP
CHLHPTSALFGLGNTPDYVVYHELVMTAKEYMQCVTSVDGHWLAELGPMFFSVKESGKSG
RAKKKQAAEHLQEMENQMQVAQEEMRARKEAADKKEAAMKKGQEIISAGTTPRRTPSRLG
L
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagaggatgataatattcatgtcttggaaggaagcagtaatcagaaaggtggt
ctcatcgtcaaaaaaagcactacgaccccaactttcaaagttcctcaacgatcgttattg
ggcttagataaacttgcagcagctaaaagaaaagagagagaggaaaatgctgataaaaaa
atctcactgaacccagaagacggatcgaagaaagtttcaggagattctcgaaatttcaga
ataccacaatcagagacaccaacatacacaggaggtgtaacagaagaagctcggaaaagg
ttgttggataggttggatacaactaaatggaaggaaaggggagtttatgcatcttctaag
gaatcaaagagaaggtctagcaattatgatgagaagagtgaaagtcgtaatgaaaagaga
tatgaacatagagatagcaggaaacatagggatagtgagaggagaaataatcatgatgat
agcgaacggtcagatcgtagaagctctagaagagaatttagatttagagatgaacctggt
actcctgatctgagggtcaaaagtgatgtttcaaaaacagcatgggaagaagaagataca
ggataccaaccaagaaaatcatcctgggattaccccactccatctctttacaaaagacag
gagggtagttggtcagaaagaagtcatcaatccagaaggcatgattattatagcgaaaga
gataacagaaagactaagaaatcaaaatatgacgatgatacaccaaaacctactccagca
catcgttacaattcatggatgaatgatagaaaaagaacaggagcaacacctggcgtatcg
caagaagctaaggtgaaatgggatgctactgtcgatagagaagcttgggaagaggaacaa
agaagaatagatagggaatggtacaacatagatgaagggtatgatgatgaaaataatcca
ttttcaagtatcagtgaagaatatacaaagaaaaaggaagaacagttggaacaaagaagg
aaaaaaaggttatctgcacaacagaggcaaataaataaagataatgaattatgggaaaga
aataggatgcttacttctggtgttgtacattctgttgtgtttaatgaagattatgacgag
gatactctagatagagtccatttactcgtacataacatagtaccaccttttcttgatgga
aggattgtatttacaaagcagccagaacctgttattccagtcagagatccaacttcagat
atggctttgttggctagaaaaggaagccatttggtgagagtcttcagggaacaaaaagaa
aagagaaaagctcagaagaaacattgggagcttggtggtactaaaataggtaacataatg
ggtataaagaaaaaagaagatgaggaagacaaaagatacaacaaagacgatgatacagca
gattataaaacagatcaaaagtttgctgaacatatgaaaacccaagagggaacaagtgat
ttttctaggaaaaaaactatcacggaacagaggagattcctgccggtttttgcagttagg
caggaacttctcaacgttatcagggaaaattctgtagtgattattgtaggtgaaactggt
agtggtaaaacaacacagttaacacaatacctgcacgaagacggttacagtaagtttgga
atgatcggctgtacgcagccaagaagagttgccgccatgtctgttgcaaaacgtgtgagt
gatgaaatgggcacgcaattgggagatgaagttggttatgccatacgtttcgaggattgc
acttccgaaaatactgtaataaagtacatgaccgatggaatattactgagggaaagtctg
agagaagctgaactggatcactacagtgtcatcatcatggatgaagctcacgagagatct
ctaagtacagatgtactgtttggactcctaagagagatcgttgctaagcgtcatgatctc
aaacttatagtcacatcagccaccatggattccagtaaattttcaacattcttcggcaat
gttccaacattcaccatacctggacgaacatttccagttgaaacattgttcagtaaaaat
ccggttgaagattatgtagatgctgcagtgaaacaagccctgcaaatacatctacagccc
ccatcaggcgacattctcatattcatgccaggtcaagaggatattgaagttacatgtgag
gttctagctgagaggttagcagagatcgacaacgcacctgaattgtctatattaccaata
tattcgcaactaccctcagatctacaagcgaaaatcttccagagatcccctgatggtatc
agaaaatgtgtggtggccacaaatattgctgaaacatcgctgaccgtagacggtattata
ttcgtaattgattcaggatattgcaaattgaaagtgtataatccgaggattggtatggat
gccttacagatataccctataagtcaggccaatgctaaccaaaggtctggtagagcaggt
cgtacaggtccaggtcaggcatttcgtttatacactgagagacaatataaggaagaactt
cttatcacaactgttcctgagattcaaagaaccaatcttgccaacacggttctattgctc
aagtcgttgggtgtgcaggatttgctgcagtttcatttcatggacccgcccccacaggat
aacatcctgaattctttgtaccaactctggatattgcgagcattagatcatacaggaatg
ctaacaaaattaggaaggcaaatggccgaattccctctagatccgccacaatgtcaaatg
ttgatcgtttctagtcagatgggatgcacagctgaaattctgatcatagtatccatgttg
tcggtaccttccatatttttccgaccgaagggaagagaggaagaagcagacggtgttagg
gagaagtttcaagtgcccgaaagtgatcatttgaccttcttgaatgtttataatcaatgg
aaacaaaatggctactcatcacattggtgtaatgaacatttcatccatataaaagcgatg
aggaaagtgagagaggtcaggcagcaacttaaggatattctgatccaacaaaaattggac
atacagtcctgtgggactgattgggatattataagaaagtgcatttgttcagcgtacttc
caccaagcagcccgtctcaaaggaatcggagagtatgtgaactgcagaacaggcatgccc
tgccacttgcatccaacatcagctctatttggcctgggtaacactccagattatgtcgtt
taccacgaattggtgatgacggcgaaggagtacatgcagtgcgtcacctctgtcgatggc
cactggctcgcagaattgggacccatgtttttctcggtcaaagaaagcggtaaatcggga
agggcgaagaagaaacaagcagccgaacatttgcaagaaatggagaatcagatgcaggtc
gcgcaagaagaaatgagagcgaggaaggaggcagcagataaaaaggaggctgctatgaag
aaggggcaggaaatcatctctgctggtacaacaccaaggaggacgccatctcggctagga
ttgtaa
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integrated database retrieval system
