Campylobacter subantarcticus LMG 24377: CSUB8523_1327
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Entry
CSUB8523_1327 CDS
T03572
Name
(GenBank) UvrD/REP family helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
csf
Campylobacter subantarcticus LMG 24377
Pathway
csf03420
Nucleotide excision repair
csf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CSUB8523_1327
03430 Mismatch repair
CSUB8523_1327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csf03400
]
CSUB8523_1327
Enzymes [BR:
csf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSUB8523_1327
DNA repair and recombination proteins [BR:
csf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CSUB8523_1327
MMR (mismatch excision repair)
Other MMR factors
CSUB8523_1327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
PcrA_UvrD_tudor
AAA_12
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
AJC92831
LinkDB
All DBs
Position
1285504..1287567
Genome browser
AA seq
687 aa
AA seq
DB search
MSFFEGLNDSQKEAIMHIDGAMLILAGAGSGKTKTITTRLAYLIDHVGIPAQNTLTLTFT
NKAANVMKTRALALLQDQNLHNPLLCTFHKFGLLFLRLYSERIARANNFVIIDTDDKKKI
LKDLANENLKNSLASIGAYISNFKNQSKSAQEIRKELEFLKDEKNKNHEEIIYLYEQYEN
FLIQNNFMDFDDLLMLTNKILEDEQFAQEQSQKYTYITVDEYQDTNALQYQILKKLCTSH
ENICVVGDDDQSIYGWRGAKIENILNFKEQFNNVKLVKLEQNYRSTSAILQAANELIEHN
RKRLGKTLICTKDEGEEITILQNDDEKIESFKVAREVSKLLNSGINPSEIAILYRVNALS
RALEEAFSKEKIPFKLLSGIRFYERAEIKDIISYLRLFSNLNDDYSFKRIINRPKRNFGN
ASLEKLENYAKENHLSLFESLCTLQGSGFFSKKTDNELEKFILSIHKIKEKDDMLGMILA
LEDEFKIKEFYKDNPEGEDKLLNIDELYANLKDKITHGNYNGLDDILNEISLLNEQDGLD
KESICIMSIHASKGLEFDHVFIIGLEEGFFPLTSESSNIEEERRLAYVAITRAKKKLYLS
YANSRFYKGSRTRLEKSRFFGESNVIKKELTLDHQKNCYKKGDLIKHKIFGIGRVTGVSK
IGVEEKLTINFGGIERMIMSSFVEKVI
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttttgaaggattaaacgatagtcaaaaagaagctatcatgcacattgatgga
gctatgcttattttagcaggtgcgggcagtggtaagactaaaactataaccactagactt
gcttatttgattgaccatgtgggcattcctgcacaaaatacccttacactaactttcacc
aataaagctgctaatgtgatgaaaactagagcattggcacttttgcaagatcaaaattta
cacaatcctcttttgtgtacttttcataaatttggcttattatttttaaggctttatagc
gaaagaattgctagagcgaataattttgtcatcatcgacacagatgataaaaagaaaatt
ttaaaagacctagcaaatgaaaatcttaaaaattccctagcaagcattggggcttatatt
tcaaattttaaaaatcaaagtaaaagcgctcaagaaattcgcaaggaattagaattttta
aaagatgaaaaaaataaaaatcacgaagagatcatttatctttacgaacaatatgaaaat
tttttaatccaaaataatttcatggattttgatgatttactcatgctaactaataaaatt
ttagaagatgaacaatttgcacaagaacaaagtcaaaaatatacctatataacagtagat
gagtatcaagataccaatgccttgcaatatcaaattctaaaaaaactttgcacatctcat
gaaaacatctgtgtagtaggtgatgatgatcaaagtatttatggttggcgtggggctaaa
atagaaaatattttaaattttaaagaacaatttaataatgtaaaattagtcaaactagaa
caaaattatcgctcaactagcgctattttacaagctgcaaatgagcttatagagcataat
agaaaaagactgggaaaaactttaatttgcaccaaagatgagggcgaagaaattacaatt
ttacaaaacgatgatgaaaagattgaaagttttaaagttgcaagagaagtttcaaaactt
ttaaactcaggaattaatcctagtgaaatagccatactttatagagtaaatgccctatct
cgtgctcttgaagaagcttttagtaaagaaaaaattccttttaaactactaagcggaatt
cgtttttatgaaagagctgaaattaaagatattatttcttatttaagattgttttcaaat
ttaaatgacgattattcttttaaacgcattatcaaccgccctaaaagaaactttggtaat
gcaagtttagaaaagctagaaaattatgctaaagaaaatcatttgtctttgtttgaaagt
ctatgtactttgcaaggaagtggcttttttagcaaaaaaaccgataatgaattagaaaag
ttcatactaagcatacataaaatcaaagaaaaagatgatatgcttggaatgattttagct
ttagaagatgaatttaagattaaagaattttacaaagataacccagaaggagaagacaag
cttttaaatatagatgagctttatgcaaatttaaaagacaaaatcactcatggtaactac
aatggcttagatgatattttaaatgaaatttctttattaaacgaacaagatggattagat
aaagaaagcatttgtatcatgagtatccatgcaagcaaggggttggaatttgatcatgtt
tttatcataggattagaagaaggtttttttccacttactagtgaatcaagcaatatagaa
gaagaaagaagactagcctatgtggcaatcactagagctaagaaaaaactttatttaagt
tacgctaattctagattttataaaggaagtcgtacaagattagaaaaaagtagatttttt
ggtgagagtaatgtaatcaaaaaagaactaaccttagatcatcaaaaaaattgctataaa
aaaggagatttaatcaaacataaaatttttggcataggcagagtcactggggtaagtaaa
ataggtgttgaagaaaaactcacgattaattttggaggcatagaaagaatgataatgtca
agttttgtagaaaaagtgatatga
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