Cylindrospermum stagnale: Cylst_3259
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Entry
Cylst_3259 CDS
T02398
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csg
Cylindrospermum stagnale
Pathway
csg03410
Base excision repair
csg03430
Mismatch repair
csg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cylst_3259
03430 Mismatch repair
Cylst_3259
03440 Homologous recombination
Cylst_3259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csg03400
]
Cylst_3259
DNA repair and recombination proteins [BR:
csg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Cylst_3259
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Cylst_3259
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cylst_3259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFZ25420
UniProt:
K9WYH4
LinkDB
All DBs
Position
3730695..3732773
Genome browser
AA seq
692 aa
AA seq
DB search
MLVDRPVTELSKPGKRLPNQRWQIYPQQTEFAQHLAILTNISPIVSQLLINRGIETPEQA
QAFLDPESLVLPSPLEDFPDLAMSVELLREAIANQEKIAICGDYDADGMTSTALLLRSLR
ALGAQVDYAIPSRMHEGYGINKRIVEEFHSEGVGLILTVDNGISAYEPVARARELGLKVI
ITDHHDIPQKLPPANAILNPKLIAESSPYRGVAGVGVAYILAVSLAQQLGETKGLIQPML
ALFTLGTIADLAPLIGVNRRWVKRGLKHLPKSQLPGVQALIQVAGVQARGEGQGGNSSQS
QNAKTLKPEDIGFRLGPRINAIGRIGNPQTVIELLTTDDMGIALERAMQCEQINLSRQKM
CEEIEQQAIAVVEDLYATSLQFDRVLVVVQPNWHHGVIGIVASRLVERYGVPVFIGTYED
EKHIRGSARGIPEFNVFSALEYCHDLLGKFGGHKAAGGFSFPAENLLVLRSRLSEFANGC
LEPQHLKPLLKIDAQANLNEINHQLYQQLNALHPCGIDNPDPVFWTPNVQVVEQSIVGKG
HIKLTLAQTVDDQQYKIKAIAWRWRDYFPLPPRVDIAYKLRENDFNGNTTIEMELIGVRL
PNLSHIFASPPVPLRASFEHKQRQYTCGVYQNAIGSELRIKNPEGKVLVMQPGDTIGLLG
INREDAKKVDLSQPVYDGIIQAALQALSVLPC
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
gtgctagtagaccgacctgtaactgaactctcaaaacctggcaagcgcttacctaatcag
cgttggcagatatacccgcagcaaacagaatttgctcaacatctggctattttgacaaat
atctccccgattgtcagccagttgctgattaatcgtggtattgaaacaccagaacaagca
caagcatttttagatccagaatctttggttttgccttcgccgttagaagacttcccagac
ttggcgatgagtgttgagttgttgagagaggcgatcgctaatcaagagaaaattgccatc
tgtggtgactacgatgcagatggtatgactagtacggcattactactgcggagtctccgc
gctttaggtgctcaggtagattacgccatccccagtcggatgcatgaaggctatggcatt
aacaaacgcattgtcgaagaattccacagcgaaggggtaggactaattctgactgtagat
aatgggatatcggcctatgaaccagttgctagagctagagagcttggtctaaaggtaatt
atcaccgaccaccacgatattccccaaaaattgccaccagctaacgctatcctcaatccc
aaattaatcgccgaatcttcaccttatcggggtgtggctggtgttggtgttgcctatatt
ctggctgtgtctctagcgcaacagttaggggaaactaagggattgattcagccgatgttg
gcattgtttacattgggaacgatcgccgatttagcgcctttaattggtgtaaaccgtcgc
tgggtaaagcgtggcttgaagcatttacctaaatcccagttacctggggtgcaggcttta
attcaggttgctggagtgcaggccaggggagagggacaaggaggaaattcttctcaatcc
caaaatgccaaaacgttgaagcctgaagatattggttttcgtctggggccacgcattaat
gctattggtcggattggcaatccccagacggtgattgagttgctgactactgatgatatg
gggatagcactggagagagcaatgcagtgcgaacaaataaacctcagtcgccaaaaaatg
tgcgaggaaattgagcaacaagcgatcgcagttgtagaagatttatatgccacgtctctg
caattcgaccgcgtattagtcgtagtccaacccaactggcaccacggtgttattggtatt
gtcgcttctcggttggtggaacgctacggtgtccctgtgtttattggcacttatgaagat
gagaaacacattcgcggttcagcacggggaattcctgagtttaatgtgttttcagctttg
gaatattgtcacgacttgctcggtaagtttggtggacacaaagctgcggggggattttct
ttcccagcagaaaatttgctcgtgttgcgatcgcgtttgagtgagtttgctaacggctgt
ctagaaccccaacacctcaaaccactcctgaaaatagatgcccaagcgaatctcaacgaa
atcaatcatcagctttatcaacagctaaacgctctccatccctgcggtatcgacaaccca
gatcccgtattttggacacccaatgtccaagttgtagagcaatcaatcgttggtaaaggt
cacattaaacttactctggcccaaaccgtcgatgatcagcaatataaaattaaagcgatc
gcctggcgttggcgcgactacttccccctaccgccacgagtagatatcgcttacaaactc
cgagaaaatgactttaatggcaacaccaccattgaaatggagttaatcggcgtcagactc
ccaaatttgtctcacatatttgcttcaccaccagtacctctacgcgctagctttgaacac
aagcagcgtcaatacacttgtggcgtttatcaaaacgctattgggtcggagttaagaatt
aaaaatcctgaaggcaaagttttagttatgcagccaggagatacaatcggcttactaggc
atcaatcgtgaagacgccaaaaaggttgatttatctcaaccagtgtatgacggcattatc
caagctgctcttcaggctttatcagtgcttccttgctga
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