Cylindrospermum stagnale: Cylst_3671
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Entry
Cylst_3671 CDS
T02398
Name
(GenBank) putative exonuclease, RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csg
Cylindrospermum stagnale
Pathway
csg03410
Base excision repair
csg03430
Mismatch repair
csg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cylst_3671
03430 Mismatch repair
Cylst_3671
03440 Homologous recombination
Cylst_3671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csg03400
]
Cylst_3671
DNA repair and recombination proteins [BR:
csg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Cylst_3671
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Cylst_3671
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cylst_3671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
HTH_11
DUF2399
Motif
Other DBs
NCBI-ProteinID:
AFZ25795
UniProt:
K9WZK1
LinkDB
All DBs
Position
complement(4174343..4176703)
Genome browser
AA seq
786 aa
AA seq
DB search
MAEQLQQWTLAATEQPPEWFIQAVKQYAPPAGGLYAAQLLWQRGIKDESQLTAFVNYKSY
QPVSPFEFGQEMDLAVKRLQQARATGDKIAIWGDFDADGITATSVLWDGLGEFFGQNTQL
IYYIPNRLTESHGLNEQGIDNLAKQGFTLIVTCDTGSTNISEINYAKQLGIDVIVTDHHT
LPSERPPVTAIINPRYLPNEHPLFHLSGVAVAYKLVEALHQTLPDVPQHPLTDLLDLVAV
GLIADLVQLKGDCRYLAQVGIQQLQADFRQPPAARRRPGIGRLLELCQKSGDRPTDISFG
LGPRINAVSRIQGDASFCVELLTSQDAKRCNELAEVTELANTRRKSLQKDVQAQVAQKLT
QLDLSTTSVIVLADAQWPVGVLGLVAGQIAQETGRPTILLSTENSPSDSETASALNLARG
SARSINSVDLYQLVKDQAHLLHRFGGHPFAAGLSLLTENIPLFTAAINQRLRQSLGGANL
TPTVQADLAVTVAELGKELFLELKILEPCGMGNPAPKLLIQNCWFENSWHRNQQDWQKKK
VQYIKAEFDIRDDSSKSPFPGIWWGHYKEELPPGRCDCIAELDYNSHISKQRYEIRLIAV
RPSVNSAPSNQNSPQILDWRNIPKQEYSKQDSVLVIEDCPTNWDDLRAWWRKSLYNQQQL
AIAWSKPQNPPPSQIWLTLVGVAKYLSRTNQPVTRRQLLDKLGITDQTLHLGFKALKYLG
FTVQRQDRSLQINWNADNASETLADAAVNQFLAAVREEQFQRNYFAEVPLETIVNRSLEK
GAVINI
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacaactacagcagtggactcttgcagcaacagaacaaccaccagagtggttt
atccaagcggtgaaacagtatgcacccccagcaggtggactttatgccgcacaattactt
tggcaacggggaataaaagatgaatcacaactaacagcttttgtcaactacaaatcctat
caaccagtgagtccctttgagtttgggcaagaaatggatttggcagtaaaacgtttgcaa
caggcgcgggcaactggcgataaaattgccatttggggagacttcgacgccgacggcatc
accgccacatctgtgctttgggatggattgggagaattttttgggcaaaatacgcaatta
atttactacatccccaatcgcctcacagagtcccacggactgaatgaacaggggattgat
aatttagcaaaacaaggttttacattaattgttacttgtgacacaggtagcacaaatatt
agtgaaattaactatgccaaacagttaggtatagatgttattgttactgaccaccacacc
ttaccctcagaacgcccaccagttacagcaattatcaacccccgttatttgcctaacgaa
catccgctgtttcatctttctggggtggctgtggcgtataaattagtcgaagcgctacat
caaactctgcctgatgtgccgcaacatccgttaactgatttattagatttagtggcggtg
gggttaattgccgacttggtgcagctaaaaggagattgtcgctacttggcgcaagtggga
attcaacaactgcaagctgattttagacaaccaccagcagcgcgaagacgtccggggata
ggacgattattggaattgtgccagaaaagtggcgatcgccccacagatatttctttcggc
ttagggccacgcattaatgccgttagtcgcatccaaggcgatgccagcttttgcgtagaa
ttgctgactagccaagatgctaaacgttgcaatgaactggcggaagttacagaattagcc
aacacccgccgcaagtctttacaaaaagatgtacaagcgcaagtagcgcaaaaactcact
cagttagacttatcaaccaccagcgtcattgtcttagcagatgcccaatggcccgttggc
gttttgggcttagtcgctggacaaatagcccaagaaacaggccgcccaacgattttattg
agtacagaaaactcaccctctgactcggaaactgcctcagcactcaatctagcccgtggt
tctgcccgttcgattaattctgttgatttataccaattggtgaaagaccaagcacatttg
ttacatcgtttcgggggacatccctttgctgctgggttgagtttgttgacagagaatatt
cctttatttacggcggcgattaatcaaaggttgcgccaatctttaggcggtgctaacctg
acgccaacagtgcaagcagacttggcggtaactgttgcagagttaggaaaagagttattt
ttagaactcaaaattttagaaccctgtggaatgggaaatcccgccccgaaactgctgatt
caaaattgctggtttgaaaattcttggcatcgcaatcaacaagattggcaaaagaaaaaa
gtacagtatattaaagccgagtttgacattcgggatgattccagcaaaagtccttttccg
gggatttggtggggacactataaagaagaattacccccaggtaggtgtgattgcatagct
gaactagactacaacagccacatctcgaaacaacgctatgaaatcagattaattgctgtg
cgtcctagtgttaactcagcacccagcaatcaaaattcaccacagatactagattggcgg
aatattcccaaacaggaatacagcaagcaggactcagtactggttatcgaagattgtccg
actaactgggatgatttacgtgcatggtggcgaaagtcgctttataatcaacaacaatta
gcgatcgcttggtcaaaacctcaaaacccaccacccagccaaatttggctcactttggta
ggagttgccaaatatctcagtcgcacaaatcaaccagttacccgcagacaacttttagat
aaactgggtatcactgaccaaaccttacatttaggatttaaagctttaaaatatttaggg
tttacagtccaacgacaagaccgttctttgcaaatcaactggaatgctgacaacgcctca
gaaacccttgctgatgctgctgttaaccaatttttagccgccgtccgcgaagaacaattt
cagcgaaactattttgctgaagttcctctagagacgatagttaatcgtagcctagaaaag
ggggctgtaataaatatttag
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