Cylindrospermum stagnale: Cylst_5170
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Entry
Cylst_5170 CDS
T02398
Name
(GenBank) DNA-directed RNA polymerase gamma chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csg
Cylindrospermum stagnale
Pathway
csg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cylst_5170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csg03021
]
Cylst_5170
03400 DNA repair and recombination proteins [BR:
csg03400
]
Cylst_5170
Enzymes [BR:
csg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cylst_5170
Transcription machinery [BR:
csg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cylst_5170
DNA repair and recombination proteins [BR:
csg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cylst_5170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
AFZ27211
UniProt:
K9X571
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All DBs
Position
complement(5859536..5861413)
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AA seq
625 aa
AA seq
DB search
MRHAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKG
IPSYIAILLDMPLRDVEQIVYFNSYVVLGPGNAETLSYKQLLSEDQWLEIEDQIYSEDSL
LVGVEVGIGAEALLRLLADINLEQEAESLREEIGNAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLE
EVIEGHPVLLNRAPTLHRLGIQSFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGKPIITPSQDMVLGAYYLTAENPGATKGAGGYYFSLDD
VIMAYQQEQVDLHAYIYVRFDGEMETDQPDTEPVEVTENSDGSRTLLYKFRRVRQDAKGN
LLSQYIRTTPGRVIYNKAIQEALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagacacgcccaaactaatcagtttgactacgtcaaaatcggtttagcttcccctgaa
cgcatccgccagtggggcgagcgtactttgcctaatggtcaggtagttggtgaggtgacc
aagccagagacgataaactaccgcaccctgaagccagagatggatggcttgttctgcgag
agaatctttggaccagcaaaagattgggaatgccactgcggcaaatacaaacgggtgcgc
caccgtggcatagtctgcgagcgctgcggtgtggaagtcaccgagtcacgggtgcggcgt
caccgcatgggctttattaagctcgctgcgccagtggcccatgtgtggtatctcaagggc
atccctagctacattgcgattttgctcgatatgcccctgcgggatgtggagcaaattgtc
tatttcaactcttatgtagttctcggcccgggcaatgccgagactcttagctacaagcag
ttactgagcgaagaccagtggctagaaattgaagaccaaatttatagcgaagactcactc
ttggtgggtgtggaagtgggcattggggcggaggccctgctgcggttgctggcagatatt
aatctagagcaagaggcagagagcctgcgagaagaaattggcaacgccaagggacaaaaa
cgggcgaagctaattaagcgactacgagtgattgacaacttcattgccaccggctccaaa
ccagaatggatggtgatggcagttatccccgtgattccccccgatttgcgcccaatggtg
cagctagatggcggtcggtttgccaccagcgacttaaatgatttatatcgccgggtaatt
aaccgcaacaaccgcttggcaagactacaagaaattttggcaccagaaatcatcgtccgc
aacgagaagcggatgctgcaagaagcggttgatgccttaattgacaacggtcgccggggt
cggactgtggtgggggctaataaccgcccgctgaagtcgctctcagacattattgaaggt
aagcaaggacggttccggcaaaacctgttgggtaaacgggtggactattcgggacgttcg
gtaattgtcgtgggtccaaagctgaagattcaccagtgcgggttgccgagagagatggca
attgagctatttcaaccttttgtcatcaaccgcctaattagaagcggcatggtgaacaac
atcaaggcggctaaaaagctgatatcgcgcaatgaccccagcgtgtgggatgtgttggaa
gaagtgattgaggggcatccagtattactcaaccgcgccccgactctgcaccgcttaggc
attcagtcttttgaaccgattttagttgaggggagagcgattcaacttcatcccctagtt
tgtccggcttttaacgccgactttgatggcgaccaaatggcggtgcatgtgcccctgtcg
ttagagagtcaggcagaggccaggctgttgatgctggcttctaacaatatcctctcccct
gccacaggtaaaccgattattactcccagccaagacatggttttgggggcgtattatcta
acggcggaaaatcccggtgcgaccaaaggcgcgggcggatattatttctccctggatgat
gtgattatggcataccagcaggagcaagtagacctccacgcctatatatatgtccgcttt
gatggcgaaatggagacagaccaaccagacacagaacctgtagaggtgactgaaaactct
gatggtagccggactttgctttataaattccgccgtgtccgtcaagacgccaaaggaaat
ttactttctcagtatatccgcacgacccctggtcgagtgatttacaacaaagcgattcaa
gaagcacttgcaagttag
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