Cylindrospermum stagnale: Cylst_6152
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Entry
Cylst_6152 CDS
T02398
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
csg
Cylindrospermum stagnale
Brite
KEGG Orthology (KO) [BR:
csg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csg03016
]
Cylst_6152
Enzymes [BR:
csg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Cylst_6152
Transfer RNA biogenesis [BR:
csg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Cylst_6152
BRITE hierarchy
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Paralog
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GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
AFZ28119
UniProt:
K9X7P1
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All DBs
Position
6884161..6886221
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AA seq
686 aa
AA seq
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MEKGTLVEFRVQGDRRLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNGQTYKPSEI
ASFLQQVQPYLDPSSLEVAWELLVEDGETVTPSQMANLLYSESAAPHSYAAYCLLSEDKL
YFKQKGEAYEPRTAAQVAERQHQIEVESLKAKGQQEFLARVEQALKGEAVEWQRHDRQRL
EGLEKYAALMADIVRMGVNYDSLARAYPPGAPVLETMTMLGRSATPQAAFQLLIDLGWWS
PHENLFLRRSSIPVQFPHKVLEVAQQRLDFPPTDLDANRLDLTHLKVYTIDDESTTEIDD
GLSWELLSDGRQRLWVHIADPTRWLVPEDELDLEARKRGSTVYLPTGMIPMFPEVLATGP
MSLVQGRISCALSFGIVLETTGAVADYSIHPSLIKPTYRLTYEDVDEMLELGVEAEPEIE
AIANWAKQRKSWRYHQGAISINMPEAMIKVKDGEISIDILDDSSSRQLVAEMMILAGEVA
ARYGQTHNIPLPFRGQPQPELPPDEELLLLPAGFVRACAMRRCMPKSEMSITPVRHAGLG
LATYTQATSPIRRYSDLLTHFQLKAHLRGEILPFSAEQLKEVMMNVTSTTQEVTMVERQT
NRYYALEYLRRHPEQVWQITVLMWLREDSNLALILLEDIGLQLPMTFKRSVNLGEQLLVK
VGLSDPQKDMIQFQEIMYQESLVSGN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttagggttcaaggcgatcgtcgtctgggcgtagta
gaccgtccagacggcaagacccgttggtttgtggtagatgaacgcggtcagtcccacagc
ctcgcgcctagacaaattacctacacagttaacggacaaacctacaagccatctgagatt
gccagctttttgcagcaggttcagccttacttagatccatctagtttggaagttgcttgg
gaattattggtggaggatggggaaacagtcactccatcccaaatggcgaatctgttgtat
tcggaatcggccgcgccccattcttacgccgcctattgcttgttatcagaggacaaactc
tatttcaagcaaaaaggagaggcctacgagccgagaactgctgctcaagtggcagaacgt
caacaccagatcgaagtagagtcactcaaagctaagggacagcaggaatttttagctcgc
gtagaacaggcgctcaagggtgaagcagtagaatggcagcgacacgaccgccagcgttta
gaaggactggaaaaatatgcagcgctaatggcggacatcgtgcggatgggggtaaattac
gattctttggctcgtgcctatcctccaggtgctccagtattggaaactatgaccatgctg
ggacgttcggcaactccccaggcagcctttcaactgttgatcgacttaggttggtggagt
ccccatgaaaacttgttcctgcgtcgttcttcaattccggttcagtttcctcataaggta
ttagaagtggcgcaacagcgtttggattttccgccaactgacttagatgcaaatcgtctg
gatttgactcacctgaaggtgtacacaattgatgacgaaagcactacagaaatagatgat
ggtctaagttgggaattactctcggatggacggcaacgcctgtgggtgcatattgccgat
cctacccggtggttagtaccggaagatgaattagacttagaagccagaaagcgcggaagt
acagtttatttgccgacagggatgattcccatgttcccggaggtattggctactggtccc
atgagcttggtacaaggaaggatttcttgcgccctgagctttggaatcgttttagaaaca
actggggcagtagcagattacagcattcatcccagcctgattaagcccacttatcgtctc
acctacgaagatgtagatgagatgctggagttaggagtggaggctgaaccagaaatagag
gcgatcgcaaattgggcaaaacagcgcaaatcttggcgatatcaccaaggtgccatcagc
atcaatatgccagaggcaatgatcaaagtcaaagatggcgagatcagcattgacatttta
gatgattcctcatcgcggcagttggtagcagaaatgatgattttggctggtgaagtagcg
gcccgttatggtcaaactcataatatccccctaccatttcgtggtcaaccacaaccagaa
ttacccccagacgaagaattgcttctacttccagccggattcgtccgcgcctgcgccatg
cgtcgttgtatgcccaaaagtgaaatgagcattacgcctgtgcgccatgctggtttaggc
ttggctacctatacccaagcaacttcccccattcgtcgttacagtgacttacttacccac
tttcaactaaaagcccacttgcggggcgaaattttacccttctccgccgaacaactcaaa
gaagtgatgatgaatgtcacctctacgacccaagaggtgacaatggtggaacggcaaact
aatagatattatgctttagagtatttgcgccgtcatccagagcaagtttggcagattaca
gtcttgatgtggttgcgagaagatagcaacttggcactaattctgttagaagatatcggc
ttgcagttgccgatgaccttcaagcgttctgtgaatttgggcgaacaattattagtgaaa
gtcggcctctccgatccgcaaaaagatatgattcagtttcaggaaataatgtatcaagaa
agcttagtcagcggcaattaa
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