Cylindrospermum stagnale: Cylst_6190
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Entry
Cylst_6190 CDS
T02398
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
csg
Cylindrospermum stagnale
Pathway
csg03420
Nucleotide excision repair
csg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cylst_6190
03430 Mismatch repair
Cylst_6190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csg03400
]
Cylst_6190
Enzymes [BR:
csg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cylst_6190
DNA repair and recombination proteins [BR:
csg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cylst_6190
MMR (mismatch excision repair)
Other MMR factors
Cylst_6190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
AAA_12
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFZ28156
UniProt:
K9X7V5
LinkDB
All DBs
Position
complement(6932042..6934417)
Genome browser
AA seq
791 aa
AA seq
DB search
MSDPKITAPLPPESLHLELSQQSRVSLLNEKIDAIRNGLRPGQKQMADWQSGPLAVSAVP
GAGKSKGMADAAAIAIARQYKSSGRNSRRQLVVVTFTRSAAANIKAKIRECLREQLSLPQ
TGFVVHTLHGLALNIASRHPDLSQLQLENITLITPNQSHRLIRTAVEQWIAKHPGRYSRL
LAGNQFDGEETERLRRQSVLRTEVLPDLAFTVIHEAKSSGISPEKLREWSQQTTDEYAIL
RVAAGLYAEYQNLMRSRDFIDYDDMIVAALRVLDNDSARRIEQNQVFAVFEDEAQDSSPL
QTQLLEILASDGENADNSLMNLVRVGDPNQAINSTFTPADPIYFREFCQKCECLRHAGSE
RQQLLATMDQAGRSTRIIIEAANFALEWVNSLPSAGTNNGQKPFRHQKIRPVDADDPQKN
ANPEQVGRGLELYTPRDIHHTVELLGQRVVELFTQDPESCAAVLVRENRQGRWLAQNLAP
VCQEHKIRLFDVEESDRRSRIPQEILTLLQFCDRPHSPDYLKATLSVLVQRQLIPTQDLN
TPASLPEEFLYPGPLAPPQPEPVQKAAHLCRSLLRARLELPPYQMMFFLALALKYEQAEL
ATADKLAERVNQQIAGNSSMGAMLSALSEIVSSERFEPVDTEDSEARYTRTGQLTIITMH
KAKGLDWDYVFLPFLHERLIPGGLWVPPQSQFLGDFTLSEVARAQIRAALHHDVSSIPNV
TQAWEQAKQLKIAEEYRLLYVAMTRAKRLLWMSAAQKAPFTWSKPENLQSSAPCPVFPAL
KGKFPECVVNP
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccaaaaattactgctcccctgccgccagaatctctccacttagaattatct
cagcaatcgcgggtttcgctgctcaacgagaagattgacgccattcgcaatggtttgcgc
cctggacaaaagcagatggctgactggcaatctgggccattggctgtttctgctgttcct
ggtgctggtaaatcaaaaggcatggcagatgcagccgcaattgccatagctcgccagtat
aaaagttccgggagaaattcccggcgtcagctagtggtggtcacctttacacgctctgct
gctgccaatattaaagcaaaaatccgcgaatgcttacgagagcaattatctttaccgcaa
acaggctttgttgtccataccctgcatggtctagcattaaacattgccagccgccatcct
gacttatcccagttgcagttagaaaatatcacgttaattactcctaaccaaagccaccgc
ttgatcagaactgctgtagaacaatggattgctaaacatccagggcgttattctcggctg
ttggcaggtaatcaatttgatggcgaagaaacagaaaggctgcgtcgtcagtcggtgcta
aggacagaagtattgccagatttggcttttaccgtgattcatgaagccaaaagttcgggg
atatcgccagaaaaactgcgggagtggagtcaacaaaccacagatgaatatgcaatttta
agggtagcggcgggattgtatgcagaatatcaaaacttaatgcgatcgcgtgacttcatc
gactacgacgacatgattgtagccgcgctgcgggttctagacaacgacagcgcccgccgc
attgaacaaaaccaagttttcgccgtttttgaagacgaagcccaagattctagcccactg
caaacgcagttgttagaaattttggctagtgatggggaaaatgctgataattccctcatg
aatttagtgcgcgttggtgatcccaaccaggcgattaactccacttttacaccggctgat
ccgatttattttcgggaattttgccaaaagtgcgaatgcctacggcacgctggaagcgaa
cgccaacagttattggcaacaatggatcaagccggtcgtagtaccagaattatcattgaa
gcggctaactttgctttggaatgggtaaatagtctgccatccgcaggaacgaacaacgga
caaaagccatttcgccaccaaaaaattcgccctgttgacgccgatgatccccaaaaaaat
gctaatccagagcaagtaggacgagggctagaactttacactccccgcgatatccatcac
acagttgagttacttggacagagagtagtggagttatttacccaagatcctgagtcttgt
gcagcagttttagtcagggaaaatcgccaaggacgatggctagcccagaatcttgcacct
gtgtgtcaagagcataaaattagacttttcgatgtggaagaaagcgatcgccgttctcgt
attccccaagaaattttaacattactgcaattttgcgatcgcccccactcccccgactat
ctcaaagccaccctatctgtattagtacagcgtcaattaattcctacccaagaccttaac
acccccgccagtctaccagaagaatttttatatcctggccccctagcgccaccccaacca
gagccagtccaaaaagccgcacatttatgtcgtagcttactccgcgctcgcttggaactg
cccccatatcagatgatgttctttctcgccttagccttaaagtacgaacaagcagaatta
gccacagctgacaaactcgcagaacgggtaaatcaacaaatagctggtaatagttcgatg
ggggcaatgctgtcggctttgagtgaaatcgtcagttccgaacgctttgaaccagtggac
acagaggattcagaagcgcgttacacccgtaccggtcaactgacaatcatcaccatgcac
aaagccaaagggctggactgggactatgtttttctcccctttctccacgaaagactgatt
cctgggggactttgggttcctccccaaagccagtttttaggcgactttaccttatcagaa
gtagcccgcgcccaaattcgcgctgctcttcaccatgatgtatctagcatccccaatgtt
acccaagcttgggaacaagcaaagcagctgaaaatagctgaagagtaccgtttactttac
gttgccatgactagagcaaagcggctgttgtggatgtctgctgcccaaaaagcgccattt
acttggagtaaaccagaaaatttacaatcctcagcgccttgtcccgtgtttccagcatta
aagggcaagtttcccgaatgtgtggttaatccgtag
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