Clostridium saccharolyticum WM1: Closa_0654
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Entry
Closa_0654 CDS
T01288
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03410
Base excision repair
csh03430
Mismatch repair
csh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Closa_0654
03430 Mismatch repair
Closa_0654
03440 Homologous recombination
Closa_0654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_0654
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Closa_0654
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Closa_0654
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Closa_0654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADL03282
UniProt:
D9R576
LinkDB
All DBs
Position
734864..736582
Genome browser
AA seq
572 aa
AA seq
DB search
MAEEKWMLQTKRADFEEMARCHHISPVTARIIRNRDVMGREAVRKYLWGELKDLYSPHLL
KDMDRTVGILKEKTEQLKPIRIVGDYDIDGVCSTYLLYQALTKVGAVVDYEIPDRLKDGY
GINESIIRAAAGDGIDTILTCDNGIAAVEQIRLAKELGLTVLITDHHDIMKENGREILPP
ADAVVNPKQEDCTYPFPDICGGMVAYKLVQALYEAFHVPMEKWLEMVEFAAIATVGDVMK
LQDENRIIVKEGLKRMGRTKSLGLLKLIERNDLDKEQITAYQIGFVIGPCLNAGGRLQTA
KLALSLLLSRNEEEADQMARELKELNDRRKDMTKQGTSEAVEQVEALYRGDKVLVVYLPD
CHESLAGIIAGRLREYYQKPAFVLTDGEECVKGSGRSIEAYHMFDALVRVKDLLLKFGGH
PMAAGLSLLKDHVDEFRKCLNEQARLTEEDFIRKVWIDVPMPLEYINEPLIQELELLEPF
GQGNEKPLFAQKGLHIRSVRVLGKNRNAVKFSLATDQGTPMDAMLFGDGDSFLKELGDSR
ILDVIYYPSVNEYNGNKTLQVIIRNYKIPRCI
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaaaaatggatgcttcagacaaaaagggctgattttgaggaaatggccaga
tgccaccacatctcaccggtgactgcaagaatcataagaaaccgggatgtgatgggcagg
gaagctgtgagaaaatatttatggggagagttaaaagacctgtacagccctcatctttta
aaggatatggacaggaccgtagggattctgaaggagaagacggagcagttaaagcccata
cggatcgttggggattacgacattgacggtgtttgctccacctaccttttgtatcaggcg
ctgactaaggtgggagctgtggtggattatgagatcccggaccggttaaaggatggatat
gggatcaatgaatccattatcagggcagctgccggagacggcatagataccatactcacc
tgtgacaacgggatcgccgcggtggaacagatcaggctggcaaaggagctgggtcttacg
gtattaattacggaccaccatgatatcatgaaggagaacggcagggagatcctgcctccg
gcggatgcagtggtgaatccgaaacaggaggattgtacctatccctttccggatatctgc
gggggaatggtggcttataagctggtccaggctctttatgaagcctttcatgtacctatg
gagaagtggctggaaatggtggaattcgctgccatagcaacagtaggcgacgtgatgaag
cttcaggatgagaaccggatcatcgtaaaggaagggctgaaacggatggggcggacaaag
agtctgggtctgttaaagcttattgagaggaatgatctggataaggaacagataaccgct
tatcagatcggatttgtcatcggtccctgtttaaatgcgggcgggcgccttcagacagcc
aagctggccttatccctgcttcttagccggaacgaagaggaagcggatcaaatggcccgg
gaattaaaggagctgaatgaccggcgcaaggacatgacaaagcaggggacaagtgaggcg
gtagagcaggtggaagccctgtatcgcggggataaggttctggtggtttatctgccggac
tgccatgaatcactggcaggtatcatagccggacggctgcgggaatattatcagaagcct
gcctttgttttaaccgatggagaggaatgtgtcaaaggttccggccgttccattgaagcc
taccacatgtttgatgccctggtaagagtaaaggatctgctgttaaaattcgggggccat
cccatggcagccggtttatccctccttaaggatcatgtggatgaattccggaaatgtctc
aatgaacaggcaaggcttacggaggaggatttcattcgaaaggtgtggatcgatgttccc
atgcccttagagtacataaacgagcctttgattcaggaattggagctgttggagccattt
ggccagggaaatgaaaagcctttgtttgcccaaaaaggtcttcatatccgaagcgtccgt
gttttaggaaaaaacaggaatgccgtaaaattttctctggccacggatcagggaacccca
atggatgccatgctgtttggtgacggggattcttttctgaaagagctgggagacagccgg
atcctggatgtgatttattatccttccgtaaatgaatacaatggtaataaaacgctgcag
gtaattataagaaattacaagattccaaggtgcatatga
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