Clostridium saccharolyticum WM1: Closa_0896
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Entry
Closa_0896 CDS
T01288
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Closa_0896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csh03019
]
Closa_0896
Messenger RNA biogenesis [BR:
csh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Closa_0896
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Lactamase_B_3
Asparaginase_C
Lectin_like
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
ADL03515
UniProt:
D9R681
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Position
968420..970087
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AA seq
555 aa
AA seq
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MKKQDSNAKVKIIPLGGMEQIGMNITAFECEDSIIIVDCGLAFPTDDMLGIDLVIPDVSY
LKQNIDKVKGFLITHGHEDHIGALPYILKDINVPVYGTKLTIALIENKLKEHNLLKNTKR
KVIKHGQSVNLGCFRIEFIKTNHSIADASALAIFSPAGVILHTGDFKIDYTPVFGEPADL
ERFAELGKKGVLALMCDSTNATRAGFTPSERTVGKTFDNIFADHKNNRIIVATFASNVDR
VQQVINSAAKYGRKVVVEGRSMVNVIGTASELGYINIPDGTLIDIDQLKNYPDEQTVLIT
TGSQGESMAALSRMASSTHKKISIKPSDVVILSSHPIPGNEKAVSKVINELSMKGAEVIS
DDTHVSGHACQEEIKLMYALVRPKYAIPVHGEYRHIMAQRNLVQAMGIPKENVIIMSSGD
VVEVGQESWKTVDHVQAGGILVDGLGVGDVGNIVLRDRQNLAQNGIIVVVLTLEKYSNQL
LAGPDIVSRGFVYVRESEDLMEEARNIVNDAVTDCLDRHVNDWGKIKNVIRDTLSDFLWK
RMKRNPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaacaagacagcaacgcgaaagttaaaatcattcctttaggaggaatggagcag
atcggtatgaatatcactgcatttgaatgtgaagacagcatcatcattgtggactgcgga
ctggcatttcctacggatgacatgcttggtattgatttagtcataccggatgtttcttat
ctgaaacagaatatcgataaagtgaagggatttctcatcacccatggacatgaggaccat
atcggggcccttccctatatattaaaggacatcaatgttccggtatacggaacaaagctg
accattgccctgatcgagaacaagctgaaagaacataatctgcttaaaaacaccaaaaga
aaggtgattaagcacggacagtcggtgaatttaggctgttttcgtattgaatttattaaa
acaaaccacagcatcgccgatgcttccgctcttgccattttctctccggcaggcgtgatc
ctgcatacaggcgattttaagattgattatactcccgtattcggagaaccggcggatctg
gagcgttttgccgagctgggaaaaaagggggttctggccctgatgtgtgacagcaccaat
gccaccagagctggatttaccccttcggaaagaaccgtgggaaaaacttttgacaacatt
tttgcggatcataaaaacaaccgcatcattgtggctacctttgcctctaacgtggaccgg
gtgcagcaggtcatcaattctgcagccaaatatggacgaaaggtcgtggttgagggccgc
agcatggtcaatgtgatcggaacggccagtgaactcggctatattaatattccggatgga
acccttattgatattgaccagttaaaaaattatccggatgagcagaccgtgctcatcacc
accggaagccagggcgaatccatggctgccctttcccgtatggcaagcagtacccataag
aaaatatccataaagccaagcgatgtggtaattttaagttcccatcccatccccggtaat
gaaaaggcagtgtcaaaggtcattaatgagctttccatgaagggagcagaagtgatcagt
gatgacactcatgtgtcaggacatgcctgccaggaggaaatcaagctgatgtatgctttg
gtacgccccaaatatgccattccggttcatggggaataccgccatatcatggctcagaga
aatctggttcaggccatgggcatcccgaaggagaatgtaatcattatgtcctccggtgat
gtggttgaggtgggacaggaatcctggaagactgtagaccacgtccaggcaggaggaatc
ctggtagacggtcttggtgtcggcgatgtgggaaatatcgttttaagagacagacagaac
ctggcccagaacggaattattgtggtggttcttaccctggaaaaatactccaatcagctt
ttggcagggccggatattgtatccagaggatttgtttatgtccgtgaatcagaggacctg
atggaagaggccagaaatattgtcaacgacgcggtaacagactgtctggaccgccatgtc
aatgactgggggaaaatcaagaatgtgattcgtgacaccttaagcgactttttatggaag
cggatgaagcggaatcctatgattctgccgatcattatggaagtgtaa
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