Clostridium saccharolyticum WM1: Closa_1015
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Entry
Closa_1015 CDS
T01288
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
csh
Clostridium saccharolyticum WM1
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_1015
Enzymes [BR:
csh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Closa_1015
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Closa_1015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD-helicase
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
ADL03632
UniProt:
D9R6X6
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All DBs
Position
1103253..1106699
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AA seq
1148 aa
AA seq
DB search
MSLQLILGGSGSGKTFRLYTDLIRQSIEQPDTRYIAIVPEQFTMQTQKEIVSLHPNHGVM
NIDIVSFQRFAYRVFEELAISNPQVLDDMGKSMVLRKVASNKKKDLVLYKEHLSKSGFIS
QLKSMLSELYQYGITPEMLNQGIPDNVSPMLRQKLSDISVIYQGFKDYIRDKYITTEEIL
DVLCRVLPRSELIKNSVITLDGYTGFTPVQYRILKLLLNYSKRVIVTVTIDPSENLNRKT
GVQELFHMSRQMIWKLNELAKETGTGKEKDILLKNHPAVRFLGAAVTESREGTYGENALD
FLEQNLYRYKGISCQDAPGSIRLIKAINPMDEVAFVIRSIEEEIRYQGLRYRDMAVITGD
IGGYSNEIIHQFQLNGIPYFLDDKKSILKNSMVELIRAAMEIIQKDFTYESVFRYLRTGL
ITAKEDEEKADRLENYVIAMGIRGFKKWDSQWEGWYRGGKELNLEELNRYREEIMAPLRR
LKAAFGETDSTVASMTRAVTALLMETGIQEKMLAYEEKFRAMGEFTLAMEYSQVYGLVMD
LFDRLAGLLGEEHVSRREYGEILDAGFSEIQVGLIPATLDRVVVGDITRTRLDHIKVLFF
VGVNDGIVPVKKEKSSLFTDREREFLGDHQMELAPTAREEGFRQRFYLYLALTKPEKRLV
LSYAAMNGSGKSLRPSTLIGELKKLFPGLSEASPSRLSVPLTMREAKDRLADGLRDYGKR
GEERRFLELLRAFLKSGEHREEGKRLTEAAFHAYEEKGIGKLAAKALYGSVISGSVTRME
QYASCAYAHFLSYGLELMERQEYELAAMDIGNLFHDAIGLWFQRMKEEGRDFKTLTEEER
KSLVHECVTKVTEEYGNTILKSSARNAYLAGKVERITDRTVWALSEQLKKGDFVPVGFEV
SFSAADQLKAMRIPLSKEEAIHLRGRIDRLDLCEDEEAVYVKIIDYKSGSTSFDLSSLYY
GLQLQLVVYMDAALEMEERRVEDKPVVPAGIFYYNINDPVIDREGEMTDEEVSGKIQKQL
RMNGLVNSDLNAISHLDHEIGTESDVIPVAMKNGIIQEARSSVAGGKRFSSLRQYVREKL
KSEGREILDGVIDVNPYKQGNRSACDYCPYHAVCGFDLKTAGYGFRKFKPLKSEEIWPVI
EGEEEEGE
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttcaactgatattaggcggctccggctccggcaagaccttccggctttatacg
gatttgatccgccagtccatagagcagccggatacccggtatattgccatagtaccggag
caatttaccatgcagacccagaaggagatcgtttctctccatccaaaccatggggttatg
aatattgatatcgtaagctttcagcgatttgcctatcgggtatttgaggagcttgccatc
tcaaatccccaggtacttgatgatatgggaaaatccatggtactgcgtaaagtggcatcc
aataaaaaaaaggatctggtcctttataaagaacacttatccaaatccggttttatttct
cagttaaagtccatgctgtcggagctataccagtacggcataacgccggagatgctaaac
cagggaataccggataacgtaagtcccatgcttcggcaaaaattatctgatatatctgtt
atttatcaggggtttaaggattatatcagggataaatatattaccacggaggagattttg
gatgtgctgtgcagagtcctgccccggtcggagctgattaagaacagcgtgatcaccctt
gacggctataccggcttcactcctgtccagtaccggatccttaagctgcttcttaactac
agcaaacgggtcattgtcactgtaaccatagatccttctgagaacctgaacagaaaaacc
ggagtccaggagctgtttcacatgagccggcagatgatttggaaattaaatgagctggca
aaagaaacgggaacaggaaaggagaaggatattcttttaaagaatcatccggccgtccgt
ttcctgggagcggcggtcacggaaagccgggaagggacttatggggaaaatgccctggac
tttctggaacaaaatttataccgctacaaaggaatctcctgccaggacgccccaggctcc
atacgccttataaaggccataaaccccatggatgaggttgcctttgtaatccgttccatc
gaagaagagatcaggtatcaggggcttcgttaccgggatatggctgtcattaccggagat
attggaggctattccaatgaaatcattcatcagttccagctaaatgggataccttatttc
ctggatgataaaaaaagcatattaaaaaattccatggtagagctgatccgggcggccatg
gaaatcattcagaaggattttacatatgaatctgtttttcgttacttacgaaccggtctc
attacggctaaagaggatgaggagaaagccgaccgcctggaaaattacgtgattgccatg
ggcattcgggggtttaaaaagtgggattcccagtgggaaggctggtaccggggagggaag
gaacttaatctggaagagttaaacagataccgggaggagatcatggctcctttaaggcga
ttaaaagcagcctttggggaaacggattccaccgttgcctctatgacccgggcggtgaca
gcccttcttatggagacagggatccaggaaaagatgctggcttacgaggaaaaattcagg
gcaatgggcgaattcacccttgccatggaatacagtcaggtttacggactggtcatggat
ttatttgaccgtctggcagggcttctgggggaagagcatgtaagccgcagggagtatggg
gaaatcctggatgcaggattttccgagatccaggtggggctgattccggctaccctggac
cgggtagtggtgggagatattaccagaacaagactggatcacattaaggtgttgtttttc
gtgggagtcaatgatgggatcgtgccggtgaaaaaggaaaaaagcagcctgtttacggac
cgggagcgggaatttctgggtgatcaccagatggagctggctccaactgccagggaagaa
gggttccggcagaggttttacctataccttgccttaacaaagcctgagaaaagactggtc
ctatcctatgcggctatgaatggcagcgggaaaagcctgcgcccctccactctgatcgga
gaactgaaaaaactgtttcccggcctttcagaagcttccccatccaggctttctgtccct
ctgactatgagggaggcaaaggaccgtctggcggatgggctgcgggattacgggaaacgt
ggggaagaacgaagatttctggagctattaagggcctttctcaagtctggggagcacagg
gaggaaggaaaaagattgactgaggccgcattccatgcctatgaggagaaaggaatcgga
aaattagcggcaaaagccctttatggctctgtcattagcggaagcgtcacaagaatggag
cagtatgcctcctgcgcatatgcccattttttaagctatgggctggaactaatggagcgg
caggaatatgagctggctgccatggatattggaaacctgtttcatgatgccattggctta
tggtttcagcgcatgaaggaggagggaagagattttaaaaccctcacagaggaagagagg
aaaagcctggtccatgaatgcgtaaccaaggtaacggaagaatacggcaatactatttta
aaaagctccgcaagaaatgcatatctggcaggcaaggtggaacggatcacagaccggacc
gtgtgggcactgtctgagcagctgaagaagggggattttgttcctgtgggatttgaagta
tccttttccgctgccgaccagctaaaggccatgagaatccccttatcaaaagaggaagcc
attcatttaagaggcaggattgaccgtttggatttatgtgaggatgaggaggccgtttat
gtgaagatcatcgactacaaatccggaagcacgtcctttgacttatcatccctgtattac
ggccttcagcttcagctggtggtctacatggatgcggcattggagatggaggaacggaga
gtagaggacaagccggtagttcctgccggaattttctattataacataaacgatcctgtc
attgatcgggagggtgagatgaccgatgaggaggtcagcggaaaaatacagaagcagctt
cgcatgaacggactggtcaacagcgatttaaatgccatctctcacctggatcatgaaatc
gggacggaatcggatgtgattccggtggctatgaaaaacgggatcatacaggaagccagg
tcatcggttgcaggaggaaagcgtttttcttcattgaggcagtatgtgcgggagaaatta
aagtcagaaggaagggaaatccttgacggtgtcattgatgttaacccctataaacaggga
aacaggagtgcctgtgattactgcccctaccatgcggtctgcggattcgatttaaagaca
gccggatatggtttccggaaatttaaacctttaaaatccgaggagatatggccggtcatt
gaaggggaagaggaggaaggagagtaa
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