Clostridium saccharolyticum WM1: Closa_1310
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Entry
Closa_1310 CDS
T01288
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03420
Nucleotide excision repair
csh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Closa_1310
03430 Mismatch repair
Closa_1310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_1310
Enzymes [BR:
csh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Closa_1310
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Closa_1310
MMR (mismatch excision repair)
Other MMR factors
Closa_1310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
ResIII
AAA_30
DEAD
Terminase_6N
GapR_DNA-bd
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADL03913
UniProt:
D9R8T8
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All DBs
Position
1412054..1413898
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AA seq
614 aa
AA seq
DB search
MKERVIYEGAQKEAILHHQGPMLVLAGPGSGKTFTITHRICHLIKEYGVDPSNILVITFT
KAAAREMKERFESLVDGRPSGVSFGTFHAIFFRILKFAYRYDAGSIVRDEQKIRYIKEAM
DKFQVEVEDEAEFVTSILSEISSVKGDMIDLSHYYSKNCSEEIFKQLYLEYENRLRKANL
IDFDDMMVMCYELFVQRKDILEAWQKKYRYILVDEFQDINRVQYEIVRMLAAPENNLFIV
GDDDQSIYRFRGAKPEIMLGFEKDYPGAKKVLLNINFRSTKEIVEAAGKLIAHNEMRFPK
RIITKKGTGKPVITRVWQDPQEETLEIVREIMAYAKAGFDWPDMAVLFRTNLGPRLLIEK
LMEFNIPFSMKDSVPNLYDHWIAKNIISYIHVASGDLTRANVLQILNRPNRYVSRDAVET
SPVSWEGIKSFYQDKGWMVERIEQLEYDLKMIRNMAPVAAVNYIRKAVGYDDYIREYAQY
RRMKPEELLEVLDQLQESAAGYLTSEEWFRHMKDYGEELKAQAQSGEGRARGVALMTMHS
AKGLEYRIVYILDANEGVTPHHKAVLPADMEEERRMFYVAMTRPKERLHVNYVRERYSKK
QEVSRFVREYLGRE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacgggttatatatgagggggcgcagaaggaagcgatccttcatcatcagggt
cccatgctggtccttgccgggccgggttcaggaaagacctttaccatcactcaccggata
tgccacttgattaaagaatacggcgtggacccatcaaatattttggttattacatttacc
aaggcggctgccagggagatgaaggagcgctttgagagccttgtggacggcaggccgtcc
ggggtcagctttggaacctttcatgccatatttttccgtatccttaaatttgcttaccgg
tatgatgccggcagcattgtgagagacgagcagaagatccgatacataaaagaggccatg
gataagttccaggtggaggtggaggatgaggcggaattcgtaacctccatcctgtcggaa
atcagctctgtaaagggggatatgatcgacttaagccattattattcaaaaaactgctcg
gaagaaatatttaagcagctttatctggagtatgaaaaccggcttcggaaggccaatctc
attgactttgacgatatgatggtgatgtgctatgaattatttgtccagagaaaagacatt
ctggaagcgtggcagaaaaagtaccggtacatcctggtggatgaatttcaggatatcaac
cgggtgcagtacgaaatcgtccggatgctggcagctccggaaaataatctgttcatcgta
ggggatgacgaccagtccatctaccgtttccggggggcaaagccggaaatcatgctgggc
tttgaaaaggattatccgggggccaaaaaggttcttttaaatataaatttcaggagtaca
aaagaaattgtggaggcggcgggaaagctgattgcccataatgaaatgcgctttcccaaa
aggatcattacgaaaaaagggactggaaaaccggtgatcacaagagtatggcaggatcca
caggaggagacactggaaattgtccgggaaatcatggcttatgccaaggcgggatttgac
tggccggatatggcagtcctgttcaggacaaatttaggccccagactgctgattgaaaag
cttatggaatttaacatccctttctccatgaaggattctgtgcccaatctatacgatcat
tggatcgcaaaaaatataatttcttatatccatgtggcctccggggatctgaccagagcc
aatgtgctccagatcctcaaccggcccaaccgttacgtcagccgggatgccgtcgaaacc
agtcctgtgagctgggaggggataaaatccttttaccaggataagggctggatggtagaa
agaatcgagcagctggagtatgatttgaaaatgatcaggaatatggctccggtagccgct
gtaaactatatcagaaaggcggtggggtatgacgactacatcagggagtacgcccaatac
cggaggatgaagccggaggagctattggaggtattagaccagcttcaggaaagtgcagcc
ggttatctcacttcggaggaatggttccgccatatgaaggactatggggaggagttaaaa
gctcaggcccagtcaggagaaggaagagccaggggggtggcccttatgaccatgcacagt
gccaaaggcctggaataccggatcgtctatattttagatgccaatgaaggcgtaactcct
caccataaggcagtgcttccggcagatatggaggaggagaggcgcatgttttatgtggca
atgacaaggccgaaggaaaggcttcatgtgaattatgtacgggagaggtacagcaaaaaa
caggaggtctcccgttttgtccgggaatatctgggacgggaataa
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