Clostridium saccharolyticum WM1: Closa_1861
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Entry
Closa_1861 CDS
T01288
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03030
DNA replication
csh03430
Mismatch repair
csh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Closa_1861
03430 Mismatch repair
Closa_1861
03440 Homologous recombination
Closa_1861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csh03032
]
Closa_1861
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_1861
Enzymes [BR:
csh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Closa_1861
DNA replication proteins [BR:
csh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Closa_1861
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Closa_1861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
DEDDh_C
HHH_3
PCMT
7TM_transglut
Motif
Other DBs
NCBI-ProteinID:
ADL04444
UniProt:
D9QZZ3
LinkDB
All DBs
Position
2005124..2009674
Genome browser
AA seq
1516 aa
AA seq
DB search
MAKKFLEVFPSLHITDELRELLNLVEVEKVTLGRDRSSIRIYLMSPRLIHKQNIYGLEKG
IKDQLFPSKRLTIKIIERFCLSGQYTPQKLLKAYRESLLTELKNYSIIEYNMFRKAEFKF
PEPDLLRLTVEDTIVTHEKAGDLKRILEKIFHERCGMPVEIQYDYIVPKENELAKQKELQ
MQREVEEIVSRTSLAFRKGGDQEEYNSGNAGGSAGASMMEASSAEFLASGDMASAATGQS
PVPSLRMGGKKESPKSGDFDAGKKEWKDFKKGGSFYGRRSDNPDVLYGRDFDGEIIEIEK
IDGEIGEVVIRGKILTVDSRELRSQKTIMIFDVTDFTDTITVKMFAREEQLEDLKAAVVQ
GSFIRLKGVTTIDKFDGELTLGSVVGIKKSEDFTGKRMDNSLEKRVELHCHTKMSDMDGV
SEVKDIVKRAKRWGMPAIAITDHGCVQAFPDANHALDKGDDFKLIYGVEGYLVDDLKQLV
DNSKNQSLSDSYVVFDIETTGFSSSRNRIIEIGAVKVENGTIADKFSTFVNPDVPIPFEI
EKLTGINDNMVLPYPKINEILPRFLEFCGNSVLVAHNAAFDVSFIAYNAARLNLAFEPTV
IDTVALARLLLPNLNRYKLDTVAKALVVSLENHHRAVDDAGCTAEIFVAFVKMLRERGVE
TLDELNGLSTMSADMIKKLPTHHVIILAANDVGRVNLYRLISYSHIDFYARRPRIPKSVL
NQNREGLIVGSACEAGEIYQALLRGVSDAELAKLVNFYDYLEIQPLGNNGFMLRDEKSSV
KSEQDLIEINQRIVTLGEQFGKPVCATCDVHFLDPEDEVYRRIIMAGQGFKDSDDQAPLY
LRTTEEMLKEFQYLGPNKAEEVVIKNTRKIADMCEKISPVRPDKCAPVIENSDEDLRKIC
YDRAYAIYGENLPSIVIERLERELHSIISNGFAVMYIIAQKLVWKSNEDGYLVGSRGSVG
SSFVAYLSGITEVNSLSPHYYCASCHYYDFDSDEVKQFSGMAGCDMPDKVCPVCGLPLAK
DGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLADKTA
FGYVKNYYEEHGVRKRNCEISRIVQGCVGVRRTTGQHPGGIIVLPHGEEIYSFTPVQRPA
NDMTTMTVTTHFDYHSIDHNLLKLDILGHDDPTMIRMLQDLIGFDPVKDIPLDSKEVMSL
FQNTSALGITPEDIGGCKLGALGVPEFGTDFAMQMLIDTQPKYFSDLVRIAGLAHGTDVW
LGNAQTLIQEGKATIQTAICTRDDIMIYLISMGIEEGLSFSIMESVRKGKGLKTEWEEEM
TAHGVPDWYIWSCKKIKYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYASFFSIRANGFSY
ELMCQGRDKLEHYLADYKKRMDTLSKKEQDTLRDMRIVQEMYARGYDFMPIDIYRAKARH
FQIIDGKLMPSLSSIDGLGEKAADAIVDAGKDGAFLSREDFRNRTKVSKTVCDLMGDLEL
LFDLPESNQLSLFDLG
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaatttttggaggtttttccaagcttacatatcacagatgaattacgggag
cttttaaatctggtggaagtggagaaggtcactttaggcagggatagaagctctattcgt
atttatctgatgagtccaagacttatacataaacaaaatatttatggcctggaaaagggg
atcaaggatcagctttttccttccaagcggcttaccattaagattattgagcggttttgc
ctgtctggccagtacaccccccagaagcttttaaaggcctatcgggaaagcctgttaacg
gagcttaaaaattacagcattatagaatataacatgttccgcaaagcggaatttaagttt
ccggagccggaccttcttcggctgacagtagaagatacgattgttacccatgaaaaagcc
ggcgacttaaaacggattctggaaaagatttttcatgaacgctgcggtatgccggtggag
atccagtacgattatatagtccccaaagaaaatgaactggcaaagcagaaagagcttcag
atgcagcgggaggtggaggagatcgtaagcaggacctctctggcgttcagaaagggagga
gaccaggaggagtataactcaggaaatgcgggaggaagtgccggggcttccatgatggag
gcttcttccgcagaattcctggcttcaggggatatggcctctgcagccaccggccagtct
cctgtaccttcgctgcgtatgggcggaaagaaggaatctcctaagtccggagacttcgat
gccgggaaaaaggagtggaaggattttaaaaagggcggcagtttttacggacgacgctca
gataatcctgacgtactttacggccgtgattttgatggggaaatcatagaaatagaaaaa
attgacggagaaatcggcgaagtggtcattcgaggcaagattttaaccgtagacagcaga
gaactgagaagccagaagaccatcatgatctttgatgtgacggattttacggatacgatc
acagtgaagatgtttgccagagaagaacagctggaggatttaaaggctgcagtggtgcag
ggcagttttattcgcctgaagggagttacaaccattgataaatttgatggggagctgact
ctcggttccgtggtgggaatcaagaaatcagaggattttaccggaaagcggatggacaac
agccttgaaaaacgggtggagcttcactgccatacgaaaatgagcgatatggatggcgtt
tctgaggtcaaggacattgtgaaacgggcaaaacggtggggtatgcctgccattgccatc
acagaccatggatgtgtccaggcattccctgatgccaatcatgccctggataaaggagat
gactttaagctgatttacggcgtagaggggtatctggtggatgatttaaagcagcttgta
gataattccaaaaatcagagcttatcagattcctatgtggtttttgatattgagacaacg
ggctttagctcttccaggaaccggatcattgaaatcggtgcggtaaaggtggaaaatggt
acgattgcagataaattcagtacctttgttaacccggatgtaccaattccctttgaaatt
gagaagcttacaggaatcaatgataacatggttcttccttatcctaaaatcaatgagatc
ctgcccaggtttctggaattctgcgggaattctgtgctggtagcccataatgcagccttt
gacgtaagctttatcgcttataatgcagcgaggcttaacctggcttttgagcctaccgtc
atcgatacggtggctcttgcaagacttctccttcccaatcttaaccggtataaactggat
acagttgcaaaggcgctggtcgtatcccttgaaaaccatcacagggcagtggatgatgca
ggctgtacagctgaaatattcgtggcatttgtgaaaatgctccgggaacggggggtggag
actcttgatgagcttaacgggctaagcaccatgtctgcggatatgatcaaaaagcttccc
acccatcatgtcatcatactggctgccaatgatgtgggaagagtgaacctttatcgtctg
atttcatattctcatattgatttttatgcaagaaggccaaggatccccaaaagcgtgctg
aaccagaaccgggaaggcctgatcgtaggctctgcctgtgaggcaggtgagatatatcag
gctcttcttcggggcgtttccgatgcagagttggcaaagctggtaaatttttatgactat
ctggaaatacagcctttgggaaacaatgggttcatgctcagagatgagaaaagttctgta
aagtcagagcaggatttaattgagatcaatcaaaggatcgtgacccttggggagcagttt
gggaagcctgtctgcgcaacctgtgatgttcattttctggatccggaggatgaggtttac
cgaaggatcattatggcaggccagggttttaaggattctgatgaccaggcacctttgtat
ttaaggactacagaggaaatgctgaaggaattccaatacctgggaccgaataaggcggaa
gaggtggtaataaagaatacaaggaaaattgccgacatgtgcgaaaagatctctcctgta
cgcccggataagtgcgcgccagtgattgaaaattctgatgaagatttaagaaagatctgt
tatgacagggcctatgcaatctatggagaaaaccttccgtccattgttatagagcggttg
gaaagagaacttcattccattatatccaatgggttcgcggtcatgtatatcatcgcccag
aagctggtttggaaatccaatgaggatggatatctggtaggctcaagaggttctgtcgga
tcttcctttgtggcttatctgtcagggattacggaggtaaattccttaagccctcattac
tattgtgcttcctgccattattatgattttgattcggatgaggtaaaacagttttccggt
atggcaggctgcgatatgccggataaagtttgcccggtgtgcgggctccccctggcaaag
gacggatttgatattccctttgagaccttcctgggctttaagggggacaaggagccggat
attgacttgaatttctccggagaataccagagtaaggcccatgattatacggaggtcatc
ttcggcaagggtcagacctttcgggcaggtaccattggtaccctggctgataaaacggct
ttcggttatgtgaaaaattattatgaagaacatggggtcagaaaacgaaattgtgaaatc
agcagaattgtacagggctgtgttggtgtcaggaggacaacagggcagcatcctggcgga
atcattgtgcttccccatggggaggaaatttactcctttaccccggttcagcggcctgcc
aacgatatgaccaccatgacagtaaccactcattttgattaccattccattgatcacaac
ttattaaagcttgatattctgggacacgacgatcctaccatgatccgtatgcttcaggac
ttaatcggctttgatccggtaaaggatattcccctggacagcaaggaagtaatgtctctg
ttccagaacacttcggctttgggaattacgccagaggatatcggcggatgtaagcttgga
gctttgggtgttccggagtttggtacagactttgccatgcagatgctgatcgacacccag
ccgaagtatttctccgatctggtgcgcattgcaggtcttgcccatggtacggatgtgtgg
ctggggaatgcccagaccctgatccaggaagggaaggctaccattcagacggcaatctgt
acccgagatgatattatgatttatttaatatcaatgggtatcgaagaaggactttccttt
tccattatggagagcgtacgaaaaggaaaagggttgaagacagagtgggaagaggagatg
actgcccacggagttccggactggtatatatggtcctgtaaaaagattaagtacatgttt
ccgaaagcccatgcggctgcctatgtaatgatggcatggagaatcgcttattgtaaggtg
ttttatccactggcttattatgcctcttttttcagcatccgggccaacggcttcagctac
gagctgatgtgccagggacgggataagctggaacactacctggctgattataaaaagcgg
atggacactctttcaaaaaaggagcaggatactctgagggatatgaggatcgttcaggaa
atgtacgccagagggtatgattttatgcccattgacatttaccgtgcaaaggctaggcat
ttccagatcattgacggcaagctgatgccatccttaagcagcattgacggactgggagaa
aaggcggcggatgccattgtagatgctggaaaggatggagccttcctgtccagggaggat
ttcagaaacaggacaaaggtcagcaaaactgtttgcgatttaatgggagatttggaactc
ctttttgaccttccggaatccaaccagttgtctctgtttgacctgggctga
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integrated database retrieval system
