Clostridium saccharolyticum WM1: Closa_2671
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Entry
Closa_2671 CDS
T01288
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Closa_2671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csh03019
]
Closa_2671
03009 Ribosome biogenesis [BR:
csh03009
]
Closa_2671
Enzymes [BR:
csh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Closa_2671
Messenger RNA biogenesis [BR:
csh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Closa_2671
Ribosome biogenesis [BR:
csh03009
]
Prokaryotic type
rRNA helicases
Closa_2671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrD-helicase
AAA_22
Flavi_DEAD
Helicase_RecD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ADL05230
UniProt:
D9R5P7
LinkDB
All DBs
Position
complement(2903479..2904936)
Genome browser
AA seq
485 aa
AA seq
DB search
MKSFRNYIISEDIGKALKGLGYDIPTEVQARVIPAALEKNDLMVKAQTGSGKTAAYAIPI
CELIEWLENKPQALILTPTRELAVQVKEDFTNIGRFKRLKAAAIYGRHSFSMEKAELKQK
THVVVGTPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEAIMKELPMERMTML
FSATMPQEVKNMSLDYMRDPINIDVSEANITTSDIDHFLYYVKEEDKFELLNDVMIVEKP
DSCMIFCSTKDRVDIVCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRYLIATDLA
ARGIDIETISMVINYDIPLDKENYVHRPGRTGRAGQKGKAVSFLDPAQTRYLHDIQELIG
FSIQELPKPAKEEVSVQKPSFDEKMNAVPPIKKRKSDQLNKEIMKLRFNGGKKKKLRAAN
FVGVISNLEGVKAEDIGIITIQDTLTYIEILNGKGPLVLEAMKNTMICGKRLKVTEALDK
MEQMK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagttttcgtaattatatcatcagtgaggatattggaaaggcacttaaaggtctg
gggtatgatatacctacggaagttcaggccagagtcattccagccgctttagaaaaaaat
gatcttatggtcaaagcacagaccggaagcggcaaaacagctgcatacgcaataccaata
tgcgaattaattgaatggcttgaaaataaaccgcaagcgctcattcttactccgacaagg
gaactcgctgttcaggtgaaagaagattttaccaatataggcagatttaaacggctaaaa
gcagcggcgatctatggaaggcactcattttctatggagaaagcagagttgaagcagaaa
acacatgtagttgttggtactccggggcgtgttatggatcatataaagaaaggtacctta
cccttaactaagatcaactatttggtaattgatgaagcggaccggatgctggatatggga
tttataaaacaggtggaggcaattatgaaagagctgcctatggaacggatgacaatgttg
ttttctgctaccatgccccaggaagtaaaaaatatgtcattggattatatgagagatcct
ataaatatcgatgtcagcgaggccaatattacaacctctgacattgatcattttctttat
tatgtcaaggaagaagacaaatttgaattgcttaatgatgttatgattgtagaaaaaccg
gacagctgtatgatcttttgcagtacaaaggaccgggtggatatagtatgtgaacgtctg
aagaatttcggctatccttgtaataaaatgcatggcggcatggaacaggctgaccgctta
tcatcaatcaagggatttaaaagaggagagtaccgctatttaatagccacagatttagct
gcaagagggatcgacattgaaactatttcaatggttattaactatgacattcccttggat
aaggaaaactatgttcatcgtccaggaaggacagggcgtgcaggtcaaaaagggaaggcc
gtttcctttttggatcctgcacaaaccagatatttgcatgacatccaggagttgatcggg
tttagcattcaggaattaccgaaacccgccaaggaggaggtttccgttcaaaagccttcc
tttgatgaaaaaatgaatgcggtccctccgattaaaaaaaggaaaagtgatcagttaaac
aaagagattatgaaattacgtttcaatggcggaaagaaaaagaagctcagagcggccaat
tttgttggagtcatttccaatctggaaggtgtcaaggcagaggacatcggaataataacc
atacaagataccctgacctatattgaaatacttaacgggaaaggtccattggttctggaa
gccatgaaaaatacaatgatttgcgggaagcgattgaaggttacggaagcattggataaa
atggaacagatgaaatga
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