Clostridium saccharolyticum WM1: Closa_2939
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Entry
Closa_2939 CDS
T01288
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Closa_2939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csh03019
]
Closa_2939
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_2939
Enzymes [BR:
csh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Closa_2939
Messenger RNA biogenesis [BR:
csh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Closa_2939
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Closa_2939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Pox_I6
DUF4762
Motif
Other DBs
NCBI-ProteinID:
ADL05475
UniProt:
D9R743
LinkDB
All DBs
Position
complement(3166629..3168461)
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AA seq
610 aa
AA seq
DB search
MDKFQALKHYFGYDHFREGQELLIDSILAGRDALGIMPTGSGKSLCFQIPALMMEGITLV
ISPLISLMKDQVTTLNQAGIHAAYLNSSLTASQYYKALSYAREGRYPIIYVAPERLVTDE
FLDFALNTNISMVAVDEAHCVSQWGQDFRPSYLKIVDFINKLPKRPVISAFTATATKEVR
EDVIDILMLQEPAVVSTGYDRPNLYLGVQSPKDKYATLKNYVERHPDQCGIIYCLTRKLV
EEVCDRLNQEGFSATRYHAGLRDEERRKNQDDFIYDRSRIMVATNAFGMGIDKSNVRFVL
HYNMPKNLESYYQEVGRCSRDGEPGECILLYSGQDVVTNQMFIDNNQDNQELDPVTSRMV
TERDRERLRKMTFYAFTNECLRDYILRYFGEYGENYCGNCSNCLSRFETVDVTDIANKLL
ECVKTSKQRYGTAVIIDTVHGANTAKIRNYRMNENPHYGCLAKVPAYKLRQVMNHLFLND
WMAVTNDEYAIVKLTDKSGEILEEGASVIMKMAREQEPAEKEKRGKKMKKPNASAMDLTE
GEAALFETLRELRLEIAKEEKVPPYIVFSDKTLVHMSVRKPKTKEEMLTVSGVGDYKYEK
YGERFLKVFL
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggataaatttcaggcattaaagcactatttcggttacgaccatttccgggaagggcag
gaactgctgattgacagcattttggctggcagggatgccctgggaatcatgcctaccggt
tccggaaaatccctgtgcttccagatcccagcccttatgatggaaggaatcacactggtc
atctcccctttgatctctcttatgaaagatcaggtaacaactctcaatcaggcaggcatt
cacgccgcgtatcttaacagttctttgactgcaagtcagtattataaggccctgtcctat
gcacgggaagggcggtatcccattatttatgtagcaccggaacgtcttgtgacggatgaa
tttctggattttgcactaaacacgaatatttccatggtagcagtggatgaggctcactgt
gtatcccagtggggacaggattttagaccaagctatctgaaaattgtggattttattaac
aagcttcccaaacgtccggttatcagtgcatttacggctactgctacaaaagaagtccgt
gaggatgtcattgatattctcatgcttcaggaacctgctgtggtttctaccggatatgac
aggcctaatctctatttgggcgtccagtctcccaaggataagtatgccactttaaagaat
tatgtggagcgccacccggatcagtgcgggatcatttactgtctgacaagaaagctggtg
gaagaggtatgtgaccggctgaatcaggaaggattttcggccacaaggtatcatgcaggg
ttaagggatgaggagcgtaggaagaatcaggatgatttcatctatgacagaagccggatc
atggtggcaaccaatgccttcggcatggggattgacaaatccaatgtgcgatttgtcctt
cattacaatatgccgaagaacctggaatcctactatcaggaggtaggccggtgctccagg
gacggggaaccgggagaatgcatcctgctttacagcggccaggacgtggtgaccaaccag
atgtttatagacaacaaccaggacaatcaggaactggatcccgtcaccagccggatggtt
acggaaagggaccgggaacggcttaggaagatgaccttctacgcctttaccaatgagtgt
ctgagggattatatcctgcggtattttggggaatatggagagaattattgcggaaactgt
tccaactgcttaagccgctttgaaacggtggatgtgacggatattgccaataaattgctt
gaatgcgtgaagaccagcaaacagaggtatgggactgctgtcatcattgatacggttcat
ggagctaacacggcaaagatcagaaactaccggatgaatgaaaatccccattatgggtgt
ctggcaaaggttcctgcctataaactgcggcaggtgatgaaccatcttttcttaaatgac
tggatggctgtaaccaatgatgaatacgccattgtaaagctgacggataaatccggggag
atactggaagaaggagcgtctgtgatcatgaaaatggcccgggaacaggagcctgcggaa
aaagaaaagagggggaagaagatgaagaagcccaatgcctctgctatggatttaacagaa
ggggaggcggctttgttcgagaccttaagggagttgaggctggagattgccaaagaagaa
aaggtgccgccttatatcgtattttccgacaaaaccctggtacatatgtccgtgagaaag
ccgaagacaaaggaagagatgctgacagtttcaggcgttggggattataagtatgaaaag
tatggggaaaggttcttgaaggtgtttctgtaa
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