Clostridium saccharolyticum WM1: Closa_3039
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Entry
Closa_3039 CDS
T01288
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Closa_3039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csh03019
]
Closa_3039
03016 Transfer RNA biogenesis [BR:
csh03016
]
Closa_3039
Enzymes [BR:
csh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Closa_3039
Messenger RNA biogenesis [BR:
csh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Closa_3039
Transfer RNA biogenesis [BR:
csh03016
]
Prokaryotic type
tRNA degradation factors
Closa_3039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
OB_RRP5_4th
CvfB_2nd
S1_RRP5
KH_Vigilin
KH-I_KHDC4-BBP
KH_Mug60-KHD4
KH_KhpA-B
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
ADL05572
UniProt:
D9R7R8
LinkDB
All DBs
Position
complement(3294503..3296632)
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AA seq
709 aa
AA seq
DB search
MFKSFSMELAGRTLTVDVGRVAKQANGAAFMHYGDTVVLATATASDKPRDGIDFFPLSVE
YEEKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDQ
DCSPELTAMLGSAIATCISDIPFDGPCASTQIGLVDGELVVNPTQAQKQVSDMALTVAST
REKVIMIEAGANEVPEDKMIEAIFKAHEVNQEIIKFIDTIVAECGKPKHGYTSCAVPEEL
FAAIKEIVTPEEMEVAVFTDEKQVREENIRNITAKLEEAFADKEEWLSVLGEAIYQYQKK
TVRKMILKDHKRPDGRAMDQIRHLAAEIDMLPRVHGSAMFTRGQTQILNICTLAPLSESQ
RLDGIDDMETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFP
YAIRTVSETMESNGSTSQASICSSSMSLMAAGVPIKAAVAGISCGLVTGDTDDDYIVLTD
IQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIRTTRKARLYILDEVMAK
AIAEPRKEVGKYAPKIDQISIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGNVSVCG
TDQTMIDRAIQIIKSIVTEIEAGQIFTGKVVRIMNFGAFVELAPNKDGMIHISKLSEKRV
AKVEDVINIGDEVTVKVIEVDKMGRINLSMKPGDLSAKPEDKKEAKDTE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagagttttagtatggaactggccggcagaacattgaccgttgatgtcggcaga
gtagcaaagcaggcaaacggcgcagcgttcatgcattatggtgacaccgtagtattggcc
actgcaactgcttccgataagccaagggatggaatcgacttcttccccttgagtgtagag
tatgaagaaaaattatacgccgttggaaagattcccggcggattcaacaaaagagaggga
aaggcgtctgaaaatgccattttaacgtcccgtgtgattgaccgtcctatgagacctttg
tttcccaaggattaccgcaacgatgtaaccttagataacatcgttatgtccgtagaccag
gactgcagcccggagctgactgccatgttaggctcagccattgcaacctgcatttccgat
attccctttgacggtccctgtgcctccacccagatcggccttgtagacggagaacttgtg
gttaacccgacccaggctcagaaacaggtatctgatatggcacttacggtggcgtccaca
agagaaaaagtcattatgatcgaggcaggagccaatgaggtgccggaagataagatgatc
gaggccattttcaaagcacatgaagtaaaccaggaaatcatcaaattcattgacaccatc
gtagcagaatgcggtaagccaaagcacggatataccagctgtgccgttccggaagagctg
tttgcagcgatcaaggaaatcgtcactccggaagagatggaggttgctgtattcaccgat
gaaaagcaggtgagagaagagaacatccgcaacatcacggcgaaactggaagaagccttt
gcggataaggaagagtggctgtctgtattgggagaagccatttaccagtaccagaaaaag
accgtccgcaagatgatcttaaaggaccacaagcgtccggatggccgtgccatggatcag
atccgtcatctggcggcagagattgatatgcttcccagagttcatggttctgccatgttc
acccgcggccagacccagatcttaaatatctgtaccctggctcctttgtcagaaagccag
agattagacggcattgatgatatggaaacatctaagagatatatgcaccactacaatttc
ccctccttctctgtcggtgaaacaaagccttccagaggaccgggacgccgggaaatcggt
catggtgcgctggcagaaagggcattgatccctgttcttccctctgaggaagaattccca
tatgccatccgtactgtttctgagaccatggaatccaatggatctacctctcaggcaagc
atctgctcttcatccatgtctttaatggccgccggtgttcccattaaagcagctgttgcg
ggtatttcctgcggtctggttaccggagatacggatgacgattatatagtactcaccgat
attcagggactggaagatttcttcggagatatggactttaaagtaggcggtacccataaa
gggatcactgccatccagatggacataaagatccatggacttacaagacctattatcgag
gaagccatccgtacgaccagaaaagcaaggctctatatccttgatgaggtcatggcaaag
gccattgctgagcctcgtaaggaagtaggaaagtatgctccgaagattgaccagatatcc
attgatcctcagaagatcggtgatgtggtagggaagcaggggaaggtgatcaataagatc
attgaggagaccggtgtgaaaattgacatttccgatgacggaaatgtatcggtatgcgga
acggatcagaccatgatcgaccgtgccatccagatcataaagagcattgtaacagagatc
gaagcgggtcagatctttacaggaaaggttgtgaggatcatgaacttcggtgcttttgtt
gaactggcgccaaacaaggatggtatgatccacatttccaagctgtctgaaaagagagtg
gcaaaggtggaagatgtgatcaacatcggcgatgaagttaccgtcaaggtaatagaagtg
gataaaatgggcaggatcaacttaagcatgaagccgggagatctgtccgcaaagccggaa
gataagaaagaagcaaaagatacagaataa
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