Clostridium saccharolyticum WM1: Closa_3489
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Entry
Closa_3489 CDS
T01288
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03420
Nucleotide excision repair
csh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Closa_3489
03430 Mismatch repair
Closa_3489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_3489
Enzymes [BR:
csh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Closa_3489
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Closa_3489
MMR (mismatch excision repair)
Other MMR factors
Closa_3489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
Zeta_toxin
TAN
PhoH
Motif
Other DBs
NCBI-ProteinID:
ADL06015
UniProt:
D9RA43
LinkDB
All DBs
Position
complement(3757360..3759219)
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AA seq
619 aa
AA seq
DB search
MQERIPPLQWTPSGGIILEENATTSVKAEKNVLVVAGPGAGKTELLAQKTGYLFQTNICT
YPKKILAISFKTDAAANLKERIESRYGKEYAIRFSSLTYDAFAKKILDQFRNALPEELCP
SKDYIIGDKKTIDAAFKKSGYLNPRGLTPSRLAVYYENVIATTPLPVCGDSIGSNVWRLL
IRGFDDNPSCLTFKMISMLTIYIFSTNPYVLRGLQATYSHVFLDEFQDTTSLQYDLVKMG
FQNSNSKITAVGDNKQRIMVWAGARKTIFEDFQQDFNAMKIPLLMNHRSAPRLVDLQKLM
YTSLQVDLIDLQTSKKWEKNDGDIKLYISENEDLEAKYLVADITEKISNGVSLKDICILV
KQLPGNYIDTLVTVLSSFGIKARIETEYQDILKEFIVVLVLNTLKVSINRRSPTEWEYVN
NAMEGLKGFDSTERSDAYDQEHINLINLLNATSEKLALDITETEFHEVINNIIQFFDIEK
IKALYPTYAQGNFFEDIVNKMIDLLWKEFEECNNWNLSFENFQGLYSIPIMTIHKSKGLE
YTAVYFVGLEDGAFWSFRNQPEEDRCAFFVALSRAKEFLSFSFCAYRHKLRNPNQKHTEI
NEFFELLKLPGISTVINCD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaaagaatcccacctttacaatggacaccgagtggtggaataatattggaagaa
aatgcaacaacatctgtaaaagctgaaaaaaatgtactggtcgttgcagggccaggtgct
ggaaaaaccgaattactcgcacaaaaaacaggatatttatttcaaacaaatatctgtaca
tatcccaaaaaaatacttgctatcagttttaaaactgacgctgctgcaaacttaaaagag
agaatagaaagtagatatggaaaagaatatgctatcagattttcttctctcacttacgat
gcgtttgcaaaaaagattctggatcaatttagaaatgctttaccagaagaactttgtcct
agcaaggattatattataggagacaagaaaactattgatgcagcattcaagaaatctggt
tatttgaatcctagaggtttaacacctagtagattggcagtgtattatgaaaatgtgatt
gcaacaactcctttacccgtatgcggagattctattggtagtaatgtatggagattacta
attagaggttttgatgataatccttcgtgcttaacttttaaaatgataagtatgttgaca
atatatattttttcaacgaatccatatgtattaagaggtttacaagcgacatattcccat
gtatttttagatgaatttcaggatacaaccagcttgcaatatgatttggttaaaatgggt
tttcaaaattctaattctaagatcactgctgtgggggataataaacagcgaatcatggtg
tgggcaggtgcgaggaaaactatctttgaagattttcagcaggatttcaacgctatgaag
attccactattgatgaatcatagatctgcgccacgactagttgatttacagaaattaatg
tacacctctttacaggtggatcttattgatttacaaacttcaaaaaaatgggagaagaat
gatggggatataaaactgtatatatcagaaaatgaagatctggaagcaaaatatctggtt
gcagatataaccgagaaaatatctaatggagtttcattaaaagatatttgtattttagtt
aaacaattaccgggaaactacatagatactcttgtaacagtactttcttcttttggtatt
aaggcaagaatagaaacggagtatcaagacatattaaaggaatttattgttgtactcgtt
ttgaatacattaaaagtttcaatcaatcgacgctcacctacagaatgggaatatgttaat
aacgcaatggaaggactgaaaggatttgattcaaccgaaagatctgacgcatatgatcag
gagcatattaatttaataaaccttctgaatgcgacatctgagaaattagctttagatatt
acggaaaccgaatttcacgaagtaataaataacattattcaattctttgatattgagaaa
ataaaagcgttatatccaacatatgcacaaggaaatttctttgaagatattgttaataaa
atgattgatctattatggaaagaatttgaagaatgtaataattggaatctatcctttgaa
aattttcaaggattatattctataccaattatgactatacataaaagtaaggggcttgag
tatacagctgtttactttgtagggcttgaagatggtgctttttggagttttagaaatcaa
cctgaagaagataggtgtgctttttttgtcgctctttcgagggcaaaagaatttttgtct
ttttcattttgtgcatatcgtcacaagttaaggaatccaaatcaaaaacatacagaaata
aacgaattttttgaactattaaagttgccaggtatctctactgttattaactgtgattaa
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