Clostridium saccharolyticum WM1: Closa_3921
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Entry
Closa_3921 CDS
T01288
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Closa_3921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csh03019
]
Closa_3921
Enzymes [BR:
csh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Closa_3921
Messenger RNA biogenesis [BR:
csh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Closa_3921
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADL06435
UniProt:
D9R0K2
LinkDB
All DBs
Position
complement(4251098..4252513)
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AA seq
471 aa
AA seq
DB search
MQFKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTI
QLLREEKESHGAKQNIRALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEE
KLKQRVDILVATPGRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKKIIARTPLK
KQTLLFSATMPPDIAKLAGTILKAPAKIEITPVSSTVDTIGQYVYFVDKSNKKDLLLHVL
KDNNIVSALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLRILI
ATDIAARGIDIDELTHVINYDLPDIPETYVHRIGRTGRAGLGGTAISFCDYDEKEQLNDI
ERLIGKKITEIKDHPYPLKNNVPGIKAVQPRREAAKTEKTKAKHPERAFLKSKASLQTAS
LKPGVSSKREPLHTSSVDGASATKKKYRMTADGTLKEKKSFHKFSRKDKKW
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaaagatttaaatattatacctgatataataaaggcattggaaaaagaaagt
taccttattcctacaccgatacaggaagaggcaatacctgttatattaagcggcagggat
ttacttggctgtgcccagacaggcaccggaaaaacagctgcatttgccataccaacgatt
cagctgctgagagaagagaaagagtcacatggggcaaaacagaatataagggccctgatt
gtaacgccgacaagagagctggctctgcaaatatatgaaagttttaatacttatggaaaa
ttcactgatttaaagtgctgcgtagtctttgggggagtatcccaaaagccccaggaggaa
aaattaaaacaaagggtagatatcctggtggcaacgccagggcgacttctggccttaatt
gatcaaaaaattgttaatatagatcatattaaaatattgatactggacgaagcggaccgt
atgctggacatgggatttattcatgacgtaaaaaagatcattgccagaactcctttaaaa
aagcaaactttacttttctcggctacgatgccgccggacattgccaagctggcaggtacg
attttaaaggctcctgcgaaaatagaaatcactccggtatcttcaaccgtggataccatc
gggcagtatgtgtactttgtagataaaagtaataagaaggatttgcttttgcacgttcta
aaagataacaacatagtttccgccctggtatttacacgtaccaagcacggtgcggaccga
ctgaataagcaattatcaaggaataacgtaattgcacaggcaatccatggagataaatca
caaggagcccgccagagtgcattaaacaattttaaaaacaaatcattgcggatattgatt
gcaacagatattgcagcaaggggaatagacatcgatgaactaactcatgtgattaattat
gacctgccggatatcccagagacgtatgtacatcgtattgggcggacaggccgggcagga
ctaggcggaaccgcaatatcgttctgtgattatgatgaaaaggaacaactgaatgatatt
gaaaggctgattgggaaaaaaataacagaaataaaagaccatccctaccccttaaagaac
aacgttcctgggataaaggcagtgcagccacgtagagaagcagcgaaaacggagaaaacc
aaagccaaacatccggaaagagcatttctaaaatcaaaagcctcactccagacggcctca
cttaaaccgggtgtatcatcaaagagagagccattgcatacctcttccgtagatggagct
tcagcaacaaagaaaaagtaccgaatgacagcagatggaacattgaaagaaaaaaagagt
tttcataagttttcaaggaaggacaaaaaatggtag
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