Clostridium saccharolyticum WM1: Closa_3948
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Entry
Closa_3948 CDS
T01288
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Closa_3948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csh03019
]
Closa_3948
03009 Ribosome biogenesis [BR:
csh03009
]
Closa_3948
Enzymes [BR:
csh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Closa_3948
Messenger RNA biogenesis [BR:
csh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Closa_3948
Ribosome biogenesis [BR:
csh03009
]
Prokaryotic type
rRNA helicases
Closa_3948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADL06460
UniProt:
D9R1D7
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All DBs
Position
complement(4279366..4281084)
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AA seq
572 aa
AA seq
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MGTRLAVRKDQAFMETVRFDELQLDERILRAVADMGFEEASPIQAQAIPVQAEGRDIIGQ
AQTGTGKTAAFGIPLLQKIDPKVKKLQAVALCPTRELAIQVADEIRRLAKYMHGVKVVPI
YGGQDIVKQIRSLKDGTQIIIGTPGRVMDHMRRKTVKFDHVHTVIMDEADEMLNMGFLED
METILSQLPEERQTVMFSATMPPAIMEIARKFQQDPVTVKVVKKELTVPKVTQYYYEVKP
KSKVEVMCRLLDMYAPKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMG
SFRNGKTEILVATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFV
VGKEVYKLRDIQRYCKTKIVPQAIPSLNDVTAIKVDKILETVADTIGDTDLSKTVNIIEK
KLLEEDYTSLDLAAALLKMMMGEENEDIIDTREPRSLDELDNFYGGGSRGRSSGRNGSGS
SRGGRYDSSRDDMARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEV
PRENADAVLQAMKDVKIKGKNIHMEKANGKGR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgggaacccggttggccgtaagaaaggatcaagcatttatggaaacagttagatttgat
gaattacagttagatgaaagaattctgcgggcagttgcggatatgggatttgaagaagca
tctcccattcaggcccaggccattccggttcaggcagaaggccgggatattatcggtcag
gctcagacgggaacagggaaaacagccgcctttggcatccctctgctgcagaaaattgac
cctaaggtgaaaaagcttcaggcggtggctctctgtcctaccagagaacttgccatccag
gtggcagatgaaatccgcaggcttgcaaaatatatgcacggtgtaaaggtcgttcccata
tacgggggacaggatattgtaaaacaaatccgatcactgaaagatggtacccagatcatt
atcgggacaccgggacgtgttatggaccatatgcgcaggaagaccgtgaaattcgatcac
gttcataccgtgatcatggatgaagccgatgagatgttaaatatgggattccttgaggac
atggaaaccattttaagccagcttccagaggaacggcagaccgttatgttctccgcaacc
atgccgccagccatcatggagatcgccagaaagttccagcaggatccggtgactgttaaa
gtggtaaagaaggagctgacagttcccaaggtgactcagtattattatgaggtgaaaccg
aagagtaaggttgaggttatgtgccgccttctggatatgtacgctccaaagctttctgtt
gctttctgcaacaccaaaaagcaggttgatgagctggtacaggcccttcagggaagggga
tattttgcggaaggacttcatggagatttaaagcagattcagcgtgaccgggtcatgggc
agcttccgtaacggtaagacggagatccttgtagcgaccgacgtagcggcccgaggaatt
gacgtagacgacgtagaggctgtattcaattacgaccttccccaggatgacgaatattat
gttcaccggatcggccgtaccggccgtgcaggccgtgagggcattgcattcagttttgtt
gtggggaaagaggtttacaagcttcgtgacattcagcgttactgcaagaccaagatcgtt
cctcaggcgatcccatccttaaatgatgtaacagccataaaggtggataagatcttagag
accgtggcagataccatcggggatacagatttaagcaagacggtaaacattattgaaaag
aagcttctggaagaggattatacctctcttgaccttgcggcagcattgcttaagatgatg
atgggtgaggaaaatgaggatattattgatacaagagagcctcgttcccttgatgaactg
gataacttctacggcggaggaagccggggacgcagcagcggaagaaacggaagcggcagc
agccgcggaggaagatatgattcttccagagacgatatggcccgtctgtttatcaatatc
gggaaaaaccagaatgtgaagccgggagatatccttggtgccattgcaggagagtccggt
atgcctggaaagatggtgggaagtattgatatgtatgacaagtatacctttgtagaggtg
cccagggaaaacgctgacgccgtattacaggccatgaaggatgtaaagatcaaaggaaaa
aatatccatatggaaaaagccaacggaaaaggcagataa
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