Clostridium saccharolyticum WM1: Closa_4074
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Entry
Closa_4074 CDS
T01288
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csh
Clostridium saccharolyticum WM1
Pathway
csh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Closa_4074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csh03400
]
Closa_4074
Enzymes [BR:
csh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Closa_4074
DNA repair and recombination proteins [BR:
csh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Closa_4074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
nSTAND3
UB2H
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ADL06583
UniProt:
D9R2F9
LinkDB
All DBs
Position
complement(4407080..4410619)
Genome browser
AA seq
1179 aa
AA seq
DB search
MSDLFEKPLRELKDFEDLSSDLLKKAGPVMASGCMDSQKVHLMYEAAKQEGFRLVVTYDD
TRAREIYEDLRFFEPDVWLYPARDLLFFSADIHGNLLTKQRMTVFRQLMEKTSGWVVTTF
DGLMDHLLPLKYLKEQVLSVEGGQTIDVEEWKKRLIELGYERMGQVDGMGQFSIRGGIID
VFPLTEELPVRIELWDDEVDSIRTFDIESQRSIEQLESIRIYPATEMALTGAQIEEGIRV
LEKEAKKYEKDLRAQSKIQESSRIRSIVSEFLEGLKDGFRQHGLDGYIHYFCQESVSFLE
YFHGENSVVFLDEPERLREKGETVEMEFRESMIHRLENGYLLPGQTGLLFSAKEMLARVQ
TKSTVYLTGLEQKLSGFTVKNRYSFQVKNVNTYQNGFELLIKDLTRWKKEGYRVILLSAS
RTRASRLAGDLREYDLRAYCPDEGGESQEVKPGEILVTFGNLHRGFEYSMIKFIVITEGD
MFGMEKKRRKRKKSSYEGTKIQNFSDLSIGDYVVHEDHGLGIYRGIEKIEQDGIIKDYLK
VEYADNGNLYLPATRLDGIQKYAGADAKKPKLNRLGGEQWNRTKTRVKGAVKEIAKELVQ
LYAARQQTHGFQYGEDTVWQKEFEEMFPYEETEDQWDAIESTKSDMESRKIMDRLICGDV
GYGKTEIALRAAFKAVQDGKQVVYLVPTTILAQQHYNTFAQRMKDFPVRVDLMSRFRTPG
QMKKTLEDLKRGMVDIVIGTHRVLSKDVQFKDLGLLIIDEEQRFGVAHKEKIKQLKENVD
VLTLTATPIPRTLHMSLVGIRDMSVLEEPPVDRMPIQTYVMEYNDEMVREAIHRELSRGG
QVYYVYNRVSNIDEVANHISGLVPEAAVTFAHGQMHEHELERIMFDFVNGEIDVLVCTTI
IETGLDIPNANTMIIQDADHMGLSQLYQLRGRVGRSSRTSYAFLMYKRDKLLKEEAEKRL
QAIREFTELGSGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKLLNQAVLELKGQR
KEEESYETVVDCDIDAYIPTSYIKNEYQKLDIYKRISGIENEDEYMDMQDELMDRFGDIP
KPVDNLLKVASLKALAQSAYVTEVNINRQEIRLTMYKNAKLKVEGIPTIIDRYKGDLKFQ
MGEEPRFSYLDRKKNPSTDAMISQAEVILKQMLELSEKN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatctatttgaaaaaccattaagggaattaaaggattttgaggatctttccagc
gatctgttaaaaaaggccggccctgttatggcaagcggctgcatggattcccagaaagtc
cacctgatgtatgaagcggcaaagcaggaaggctttaggctggtggtcacctatgacgat
acaagggcaagggagatctatgaggatcttcggttctttgaaccggatgtgtggctgtac
ccggcaagagatcttctgtttttcagtgcagatatccatggaaatttgctgaccaaacag
cggatgaccgtattccggcagttaatggaaaaaacctccggctgggtggtcaccaccttt
gacggacttatggaccaccttctcccgcttaagtatttaaaggagcaggtgctgtctgtg
gaaggcggtcagaccattgatgtggaagagtggaaaaagcgtcttattgagctggggtat
gaacgcatgggacaggtggatggcatgggacagttctccatccggggagggatcattgat
gtgttccccttaacagaggagctgcctgtgcgcatagagctgtgggatgatgaggtggac
tctatcaggacctttgatatcgagagtcagagatccatagagcagctggaaagcatacgg
atctatccggctacggagatggctctgacaggagctcagatcgaggaagggatccgtgtt
cttgaaaaggaagccaaaaaatatgaaaaggatttacgggcccagtcaaagatccaggag
tcttccaggatccgttccattgtctctgaatttttagaggggctgaaagatggattcaga
cagcatggactggacggttatatccattatttctgccaggagagcgtgtcttttctggag
tattttcatggagaaaattctgtggtattcctggatgagccggagcggcttcgggaaaaa
ggggaaactgtagaaatggagtttcgggaaagcatgatccaccgtctggaaaacggttac
cttcttccgggacagaccggacttcttttctccgcgaaggaaatgcttgcaagggtccag
acaaaatctacggtatatttgaccggtctggaacagaagctttccggctttacggtaaag
aaccgttacagctttcaggtgaaaaatgtaaatacctatcaaaatggatttgagcttcta
ataaaggatttaaccagatggaaaaaggaaggataccgggtgatccttttatccgcttcc
agaaccagggccagccgtctggcaggggatttaagggaatatgatctgcgggcttactgc
cctgatgagggaggagaaagccaggaggtgaaaccaggagaaattctggtcaccttcgga
aaccttcaccggggatttgaatattccatgataaaatttatcgtcatcacggaaggcgat
atgttcggaatggaaaaaaagaggcggaaaaggaaaaagtcctcctatgaagggactaaa
atccagaacttttccgatctttccattggtgattacgtggttcatgaggaccatggtctt
ggaatttaccggggcattgaaaaaattgagcaggatggcatcatcaaggattacttaaaa
gtggagtatgcggataacggaaacttatatcttcctgccacaagacttgacggaatccag
aaatacgccggtgcggatgcgaaaaagccaaagctgaaccggctgggaggagagcagtgg
aacagaaccaagaccagggtaaagggggctgtgaaagagattgcgaaggagctggtgcag
ctctatgcggccagacagcagacccacggcttccagtacggagaagatacggtatggcag
aaggaatttgaagagatgtttccttatgaggagacggaggaccaatgggatgccatagag
tccaccaaatcagatatggagagccggaagatcatggatcgtctgatctgcggtgacgtg
ggatacggaaagacggagattgctttaagagctgcctttaaggcggtccaggatggaaag
caggtggtctacctggtccctactaccattcttgcccagcagcattataatacctttgcc
cagcggatgaaggattttccagtccgggtggacttgatgtcccgtttccgaacacccggc
cagatgaaaaaaaccctggaggatttaaagcgcggcatggtggatattgtgatcggaacc
caccgggtcctgtcaaaggatgtgcagtttaaggatctgggactgcttatcatagatgag
gaacagcgtttcggcgtggctcataaggaaaagatcaagcagctgaaggaaaatgtggat
gtgctcaccttaacggcaactcccattcccaggaccctgcatatgagcctggtagggatc
cgggacatgagcgttctggaagaacctcccgtggaccgtatgccgatacagacctatgtc
atggaatataacgatgaaatggtgcgggaggccattcaccgggagctttccaggggagga
caggtttattatgtatacaaccgggtaagcaacatagacgaggtggcaaaccatatatcc
ggactggttccggaagcagcggttacctttgcccacgggcagatgcatgagcatgagctg
gaacggatcatgtttgactttgtaaacggggaaatcgacgttctggtctgcactaccatc
attgaaaccggcctagacattcccaatgccaataccatgatcatacaggatgcggaccac
atgggtctttcccagctataccagcttcgggggcgggtgggccgctccagccgcacctcc
tatgcgtttcttatgtataagagggataagctgctgaaggaggaagcagaaaagcgcctt
caggctatccgggaatttacagagctgggctcagggatcaaaatcgccatgcgggattta
gagatccggggagcgggaaatgttctgggagcggaacagcacggacatatggaagcggtg
ggatatgacctttactgcaagctcttaaatcaggccgttttagagctgaaaggacagagg
aaagaagaggaaagctatgagaccgtggtggactgtgatatagacgcttacatccccact
tcctatattaagaatgaatatcagaagcttgacatttacaaacggatttccggcattgag
aatgaagatgaatatatggatatgcaggatgagctcatggatcgatttggggatattcca
aagccggtggataacctgttaaaggtagccagcttaaaagccctggcccaaagtgcctat
gtaaccgaagtgaacattaaccgccaggagatccgcctgaccatgtataagaatgcaaag
ctgaaggtggaaggaatccccacgattattgaccggtataagggagatttaaagttccag
atgggagaagaacccaggttttcgtatcttgaccggaagaagaatccatccaccgatgcc
atgatcagccaggcagaggtgatattgaagcaaatgttggagttgtctgaaaaaaattaa
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