Chryseobacterium shandongense: EG350_01710
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Entry
EG350_01710 CDS
T05920
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
csha
Chryseobacterium shandongense
Brite
KEGG Orthology (KO) [BR:
csha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csha03032
]
EG350_01710 (topA)
03400 DNA repair and recombination proteins [BR:
csha03400
]
EG350_01710 (topA)
Enzymes [BR:
csha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EG350_01710 (topA)
DNA replication proteins [BR:
csha03032
]
Prokaryotic type
DNA Topoisomerases
EG350_01710 (topA)
DNA repair and recombination proteins [BR:
csha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EG350_01710 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
AZA55997
LinkDB
All DBs
Position
346016..348586
Genome browser
AA seq
856 aa
AA seq
DB search
MSKNLVIVESPAKAKTIQKYLGKDFEVKSSFGHIRDLPKKGMGIDLATFSPDYEVSADKK
KLVTELKAAVKKAEMVWLASDEDREGEAIAWHLADELKLKPENRKRIVFHEITKNAILKA
IENPRDIDQNLVNAQQARRVLDRIVGFEMSPVLWKKVKPGLSAGRVQSVAVRLIVEREKE
IREFVPKASFKLDGIFLNKTDQEIAAKLKKDFDKEEDAEKFLELAQLTEFKVLNVETKPG
TRSASAPFTTSTLQQEASSRLGYNVTNTMRLAQRLYEEGYITYMRTDSVNLSQEAIEGAK
KQITSEYGAEYSSPRNYTTKSSSAQEAHEAIRPTDFAVKTVSDVQLNRLYQLIYRRTLAS
QMANAKIEKTVIEIGNAKLPQNFEAQGEVIIFDGFLKAYGIVKTEDDDEENNEKLLPKVT
VGEVLAYKKITATEKFTRPSARYTEAGLVRKLEELGIGRPSTYAPTIQTIQNREYVDKRE
IEPQIREVVKISLVKDKIKKEVLEEKFGGDKNKFVPTDIGEVVNDFLTDNFKEILDYGFT
ARVEESFDEIASGDQKWKQMMTDFYSKFHPRIEDVEENADRATGDRLLGIDPKTGKNVHA
RIGRFGAMIQIGETEDEEKPVFASLMAGQNIATITLEEALELFKLPFDLNEVDGQPVSVG
VGRFGPYVKWGETYISIPKGEDPLSVDQKRAEEIINEKKIADAPIATYKGEPVTKGSGRF
GPFIKYKDIFVNVPKRYDFENLSQSDINELIDAKLEKEANRYIQQWEKEKISIENGRWGP
FIKFGKGMFKIPKKADDTKYDAEELKEISLDEVKKWITDQDPKAFAEKKKPAAKKTAAKK
TTTAKKPAAKKPAAKK
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaatttagtaatcgtcgaatcaccggcaaaagcaaaaacgattcagaagtat
ttggggaaggattttgaagtgaaatccagcttcgggcatatccgtgaccttcctaaaaaa
gggatgggaatcgatttggcaacctttagcccggattacgaggtttctgctgacaaaaag
aaactggtgactgagttgaaagctgccgtgaaaaaagccgaaatggtttggctcgcatcc
gatgaggaccgcgaaggggaagctattgcttggcatctcgcagacgaactgaagctgaag
ccggaaaacaggaaaagaatcgtttttcatgagattactaaaaatgccattctaaaagca
attgaaaatccaagggatattgaccagaaccttgttaatgcccaacaggcaagaagagtg
ttggacaggattgtaggttttgaaatgtcacctgtactctggaaaaaagtaaagccgggg
ttatctgcaggaagagtgcagtcggttgctgtgaggttaattgttgaaagggaaaaagaa
atccgagagtttgttccgaaagcaagttttaagctggatggtattttcctaaataaaacc
gaccaggagattgcggcaaaacttaaaaaagatttcgataaagaagaggatgctgaaaaa
ttccttgaacttgcacagttaacagaatttaaagtgttaaatgtcgaaacaaaaccggga
acaagatccgcttcagcaccttttacaacttctaccttacagcaggaagcttcttcacga
ttaggctacaatgtaaccaatacgatgcgtcttgcacaaagattatacgaagaaggatac
attacctatatgagaaccgattccgtaaatctttcccaggaagccattgaaggtgcgaaa
aaacaaatcacttcagaatacggcgcagaatattcttctccgagaaattacaccacaaaa
tcatcttctgctcaggaagctcacgaggcgatccgtcctaccgattttgctgtaaaaaca
gtaagcgatgtacagctgaacagattataccagttgatttacagaagaacgctggcttcg
cagatggcgaatgccaaaattgagaaaaccgttattgaaatcggaaatgcaaaattgccg
cagaactttgaagcacagggtgaagtgatcatttttgatggtttcttaaaagcatatggc
attgtaaaaaccgaagacgatgatgaagaaaacaatgaaaaactacttccgaaggtaact
gtcggagaagtgttagcgtataaaaaaattaccgctaccgaaaaatttacaaggccaagc
gcaagatatacagaagctggactggtaagaaaactcgaagagctgggaattggccgtcct
tctacctacgcgccaactattcagaccattcagaatcgtgaatatgtagacaaacgtgag
attgagccacagattcgtgaagtggtaaaaatatctttggtaaaggataaaataaagaaa
gaagtccttgaagaaaaattcggaggggataaaaataaatttgttcctaccgacatcggt
gaggtagtaaacgactttctgaccgacaattttaaagaaattctcgactacggttttacg
gccagggtagaagaaagtttcgatgaaattgccagcggcgaccagaaatggaaacagatg
atgacggatttctactcgaaattccatccgagaatcgaagatgtagaagaaaatgcagac
agagcaacaggagacaggcttcttggtattgatccgaaaaccggaaaaaacgttcacgca
agaatcggaagattcggagcgatgattcagatcggagaaacggaagacgaagaaaaaccg
gtttttgcatcattaatggctggtcagaatattgcaaccatcactttagaagaagcattg
gaattatttaagcttccgtttgatctcaacgaagtagacgggcagccggtttcagtagga
gttggaagattcgggccgtatgtgaaatggggcgaaacttatatcagtatcccgaaaggg
gaagatccgctttctgtagatcaaaaaagagcggaagaaattattaatgaaaagaaaatc
gcagacgcaccgattgcaacatacaaaggcgagcctgtaacgaagggttccggaagattc
gggccgtttatcaagtataaagatattttcgtgaatgtgccgaagcggtatgattttgaa
aatctttcccaaagtgatatcaacgaattaattgatgctaaactggaaaaagaagccaac
cggtacatccaacaatgggagaaagaaaagatttccatcgaaaacggaagatggggccca
tttatcaaattcggaaaagggatgttcaagattccgaaaaaagcagatgataccaaatat
gatgctgaagagcttaaggaaatttctttagatgaggttaaaaaatggatcaccgatcag
gacccgaaagcttttgctgaaaagaaaaagccggcagcgaagaagacagctgccaagaaa
accacaacggcgaaaaagcctgcggcaaagaaaccagcggcaaagaaataa
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