Chryseobacterium shandongense: EG350_02715
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Entry
EG350_02715 CDS
T05920
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csha
Chryseobacterium shandongense
Pathway
csha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EG350_02715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csha03021
]
EG350_02715 (rpoC)
03400 DNA repair and recombination proteins [BR:
csha03400
]
EG350_02715 (rpoC)
Enzymes [BR:
csha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EG350_02715 (rpoC)
Transcription machinery [BR:
csha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EG350_02715 (rpoC)
DNA repair and recombination proteins [BR:
csha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EG350_02715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AZA56173
LinkDB
All DBs
Position
571240..575505
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPIENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINKPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGRVSLNAKVRCRLPIKENGEIVTRLIETSVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIAQSIEAVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
RISERILGRVSLHNIYDPESDELIAEADQVISEALAKRIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNESRTPLMVANVPYGSILAVKP
GDKVKKGDVICRWDPYNAVIIAETAGKVEYEDIIQGVSFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVMEAGDSKVFKPGQMITARELRDE
NSKLKREDQALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
IDDLNGLKENVIVGHRIPAGTGLKEYQSVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttctccg
gaatccattcttcaggaatcgagaggagaggttcttaaaccggaaactattaactacaga
acacataagcctgaaagagacggtttgttctgtgaaaaaatcttcggtcctgtaaaggat
tacgaatgtgcttgtggtaaatacaagagaattcgttacaaagggatcgtttgtgaccgt
tgtggagtagaagttacggagaaaaaagtacgtagagagagaatcgggcatatcaatctg
gtagttccaattgctcacatctggtatttccgttctttaccgaacaaaatcggttacctt
ttaggaattccttccaagaaattggatatgatcatctactacgaaagatatgtagtgatt
cagcagggtattgctaagaaattagacggttccgatttcgagaacatggaattcttaaca
gaagaagagtatcttgatatcatggaaactcttccgattgagaaccaatatcttgatgat
tctgatccgaataaattcatcgctaagatgggtgctgaagcggttgaagaattattaaaa
agaatcgatcttgatgcattgtctttcgacctgagacacaaagcgcacaatgaaggttca
aaacaaagacgaactgaggctttaaaaagattgaacgttgtagaagcattaagaggtgcc
aatacaagaatgatcaacaagcctgagtggatgatcatgcgtgtgcttccggttatcccg
ccagagctaagaccattggttccgttggatggtggacgtttcgcaacttccgatttgaat
gacctttacagaagggtgatcatcagaaacaaccgtctgaaaagactattggagatcaaa
gctccggaagtaatcttgagaaacgagaagcgtatgcttcaggaatctgtagattcatta
ttcgataatacaagaaaatcttcagcggtaaaatctgaatcaaacagaccattgaaatca
ctttcagattcattgaaaggtaagcagggtcgtttccgtcagaacttattaggaaaaagg
gtagattactctgctcgttcggtaattgttgtaggtccaaacttgcagcttcacgaatgc
ggtattcctaaagatatggctgcagaactttacaaaccatttatcattagaaaactaatt
gaaagaggaattgtaaaaactgtaaagtcagcaaaaagaatcatcgacaggaaagaacct
gtagtatatgatatccttgaaaacgtgatgaaaggtcaccctgttctactgaacagagca
cctacgcttcacagactgggtattcaggcattccagcctaagatgattgaaggaaaagcg
attcagcttcacccattggtaactacggcattcaacgccgatttcgacggtgaccagatg
gcggtacacttaccgttaggccctgaagcgatccttgaagctcagttattgatgttaggt
tctcaaaacatcctgaaccctgcaaacggttctccaattacggtaccttctcaggacatg
gttcttggtctttatttcatgaccaaagaattaagctctacagaagatatgaaagtgaaa
ggagaaggtcttgcattctattctcctgaagaagcggaaatcgcttatgcggaaggaaga
gtatctttaaatgctaaagtaagatgtagattaccgatcaaagaaaacggagagatcgta
acaagactgatcgaaacttctgtcggtagaatcttattcaaccagattgtacctaaacaa
gtaggatatattaatgaacttttaacgaagaaatcattaagaaacgttatcggtaagatc
cttgctgatacagatttccctacaactgtgaagttcctggatgcaatgaaagatttagga
tattcaaacgcattcaaaggaggtctttctttctcattaggagacatcgtggttcctgtt
gagaaaaagcagatgattgcacaatcaattgaagctgtagacgaaattagagccaactat
aacatgggtcttattacagatacagaacgttataaccaggtaatcgacgtttggacaaat
accaatgccggattaacggaaatgatcatgagcagaatgaaaactgaccaaggtggtttc
aactctgtatatatgatgcttgactctggagcgaggggttctaaggagcagatccgtcag
ttatcagggatgagaggtttgatggcaaaaccgcagaaagccggttctacaggagcagaa
atcatcgaaaacccgatccttgcaaactttaaggaaggtctttccatcttggaatacttc
atctctacccacggtgcccgtaaaggtcttgcggataccgctcttaagactgccgatgca
ggttacttaacgagaagattggtagacgttgcacaggacgttatcgttacagaagacgac
tgtggaactttaagagggacagaagttaccgcacttaagaaaaatgacgagatcgttgaa
agaatctccgaaagaatcttaggtagagtttctttacataatatttacgaccctgaaagt
gatgaattaatcgctgaagcagatcaggtaatctctgaagcattagctaagagaatcgag
gaagcgggattagaagctgttgaggttcgttctccattaacttgcgaagctaagaaagga
atctgtgcgaaatgttacggtagaaacttggcaacaggtaaaatgattcacatgggtgaa
gcggtaggtgtaattgcagcacaatccatcggggaaccgggaactcagcttacgttgaga
accttccaccaagggggtactgcaggaaacgtatcagaaaacccatcaatcgttgcaaga
agagacggtatcgttgaaatggatgaagtaagaacaattacttctgaagatgaaaacggt
aatacagctgaggttgttgtttcccgttcaacggaattcagattggttgccgataacgag
tccagaactccgttaatggttgccaacgtaccttacggttccatattagcagtaaaacct
ggtgataaagtgaagaaaggagatgtgatctgtagatgggatccgtataacgcggttatc
attgcagaaactgccggtaaggtagaatatgaagatatcattcagggggtttcattccaa
ttggaaattgacgaacagacaggattcgaagagaaagtaatctctgaatcaagaaataag
aaagccgtacctactttgaaggtggtagattctaaaggagttgagcaaaaagcatacaac
ttaccggtaggagcccacttaatggtaaacgatggtgaaaagatcaaggctggtaaagtc
ttaatcaaaatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttaccgaattattcgaagctagaaatccttcaaaccctgcagtggttacagaaatcgat
ggggtagtttcttacggaaaaatcaagagaggtaaccgagaattgatcgttgaggctaag
actggtgaaagaaaaatttatttggttaaattatccaaccagattttggtacaggagaat
gacttcgtaagagctggttcgccactttctgacggatccatcactccggacgatatctta
agaatcaaaggtccaactgcagttcaggaatatttagtaaatgaaattcaggaagtttac
cgtcttcagggggtaaaaattgacgacaagcattttgaaatcatcgtaagacagatgatg
acaaaagtatctatcgttgacggtggtgatactcagttccttgaaggagctcttgaacac
aaatacgatttcttggaagaaaacaacagagtattcggtcttaaagttgtaatggaagcc
ggagattctaaagtattcaaaccaggccagatgattacagcaagagaattgagagatgaa
aactctaagttgaaacgtgaagatcaggctttagttgaagtaagagaagctcttcctgct
accgcaacaccggtactgcagggtattacaagagcagcccttcagacgaagtcattcatg
tctgcagcatctttccaggaaacaactaaagttctgaatgaagcagctgttgcaggtaaa
attgatgatctgaacggtcttaaagaaaatgtaattgtaggacacagaattcctgcaggt
acaggacttaaagaatatcagagtgtgatcgttggttctaagaaagaattcgaagatctt
aactaa
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