Chryseobacterium shandongense: EG350_05775
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Entry
EG350_05775 CDS
T05920
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
csha
Chryseobacterium shandongense
Pathway
csha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG350_05775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csha03019
]
EG350_05775
Enzymes [BR:
csha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG350_05775
Messenger RNA biogenesis [BR:
csha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG350_05775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
P-loop_SecA
Cas3-like_C_2
UvrD-helicase
AAA_7
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AZA56708
LinkDB
All DBs
Position
complement(1260413..1261720)
Genome browser
AA seq
435 aa
AA seq
DB search
MNFTDLNLIEPIAKAIQEQGYTNPTPIQEKSIPEITKGKDFLGCAQTGTGKTAAFAIPIL
QNLTQNKFPNKHIKALILTPTRELAIQIEENIKAYGKYLPLKHLVIFGGVKQGNQEAALK
KGVDILVATPGRLLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQKRQT
LFFSATMPAEIQKLADSILNNPVKVEVTPVSSTADTIKQSVYYVEKENKLNLLTHILKND
ISDSVLVFSRTKHGADKIARKLQKDQITTEAIHGNKSQNARQNALSNFKSGKTRVLVATD
IAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLKNTEKL
IGKKIPVIKDHPFHTDDLVVQKRDSNNKPMSAGGERPKSSRPNNSRSNNNKKKPDNASTN
VGFKKPKNKNFTRKK
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagatctaaatttaatagaacctattgccaaagcaattcaggaacaagga
tataccaaccctacccccattcaggaaaaatcgattccggaaattacaaaaggaaaagat
tttctgggctgcgcacagacaggaacaggaaaaacggctgcttttgccattcctatcctt
cagaatcttactcaaaataaatttccgaataaacatatcaaggctttaattttaacgccg
acaagagagctggctatacagattgaagaaaacatcaaagcatacggaaaatatttaccg
ttaaagcatcttgttattttcggaggtgtaaagcagggaaatcaggaagctgctttgaaa
aaaggagttgacattcttgtggctacaccgggaagattattagattttatttctcaggga
attattagtttaaaaaaccttgagatttttgtactggacgaagccgacagaatgctcgac
atgggctttgtgcatgatgtaaagaggattattaaactattgcctcagaaaagacagact
ttatttttctccgccaccatgcctgcagagattcagaaattggctgattccatcttgaac
aatccagtaaaagtagaagtaacgcctgtttcatcaaccgccgatacgattaaacaatcg
gtttattatgtcgaaaaagaaaataagctgaaccttttaacgcatatcctgaaaaatgat
atttcggattccgtgcttgttttttcaagaacaaagcacggtgcggacaaaattgcgaga
aaacttcaaaaagaccagatcacgacagaagcgattcatggtaataagtcgcagaatgca
cgtcagaatgcacttagcaacttcaaatccggtaaaacaagggttttggtagcgactgat
attgctgcgagaggaattgatattgatgagcttaaattcgtgattaattttgagctttcc
gatgtttccgaaacctatgttcaccggatcggaagaacgggaagagctggtgcagaagga
acttctatctccttcgtagacggactggatctgctgaatctgaagaacacagagaaactc
atcgggaaaaaaatccctgttatcaaggaccatccgtttcatactgatgatcttgtcgta
caaaaaagggattctaacaacaagccgatgtcagcgggtggagaaaggccaaaatcttca
agacctaacaattcaaggtcaaacaataacaaaaagaagcctgacaatgcatctaccaat
gtcggtttcaaaaagcctaaaaataagaattttacaagaaaaaaataa
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