Chryseobacterium shandongense: EG350_13920
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Entry
EG350_13920 CDS
T05920
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
csha
Chryseobacterium shandongense
Pathway
csha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG350_13920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csha03019
]
EG350_13920
Enzymes [BR:
csha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG350_13920
Messenger RNA biogenesis [BR:
csha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG350_13920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
ATP-grasp
UTP25_NTPase-like
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AZA59464
LinkDB
All DBs
Position
complement(3137744..3138862)
Genome browser
AA seq
372 aa
AA seq
DB search
MSFKNLHLINPIVRAVTEAGYSKPTEIQYSAIPHILAGKDIIGCAQTGTGKTAAFAMPIL
QLLKKYTPDHNEIRTLILTPTRELAIQIEENFGIYSKYLPLSQLSVYGGVSIGGQLAALR
KRVDVLVATPGRLLDLAGQRHIDLSKIEILVLDEADRMLDMGFINDVNKILKMLPQKRQT
LFFSATMPVNIRKFAETMLNNPVEVTVNPVSSTAKSVQQSVYFVEKNKKAGLLINILQDK
DVKRSLVFTRTKHVANKLVTQLENAGIFAAAIHGNKSQAARQNALNDFKNSKINVLIATD
IAARGIDIDDLPRVVNYELPNVPETYVHRIGRTGRAGAEGTAISFCDAEERSDLKNIQKL
IGFTMPVRQFQK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atcagttttaaaaacttacatttaatcaatcccatcgtccgtgccgtaacagaagcggga
tattccaaacctacggagatccagtattctgcaattccacatattttggcaggaaaagac
attatcggatgcgcgcagaccggtaccggaaaaactgctgcttttgcaatgcctattctt
cagctactgaaaaaatatactccggaccacaatgaaataaggactttaatacttacgcca
acacgggaactggcaatacaaattgaagaaaattttggaatctacagtaaatatcttcct
ctatcgcagctctctgtttatgggggtgtttctatcggaggacagcttgctgccttaaga
aaaagagtagatgttctggtagctacaccaggaaggcttttggatcttgcaggacaaaga
catatcgacctgtccaaaatagagatccttgtattggacgaagcagaccgtatgctggat
atgggttttatcaatgatgtaaataagatcctgaaaatgcttccacaaaaaagacaaact
ttgtttttttctgcaacaatgcccgttaatatccggaaatttgcggaaaccatgcttaat
aatcctgttgaggtgacggtaaatccggtatcgtcaacagcaaagagtgtgcagcagtct
gtttattttgttgaaaaaaataaaaaggccggtttgttgatcaacatcctgcaggataaa
gatgtgaagcgctcgttggtttttacccgtacaaagcacgttgcgaacaagctggttaca
caacttgaaaacgcaggtatttttgcagcggcaattcatggcaataaatcgcaggcagcc
cggcaaaatgctctgaatgattttaaaaacagtaaaatcaatgtcctgattgctactgat
attgcagcaagaggaatcgatatagatgatttgccaagggtggtaaattatgagcttccg
aatgttcctgaaacttatgttcatcgaattggaagaacgggaagggcaggagccgaagga
acagctatttctttctgtgatgcggaagaacgttcagatcttaaaaatattcaaaaactg
attggctttaccatgccggtcagacaatttcaaaaatga
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