Campylobacter showae: CSHOW_0508
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Entry
CSHOW_0508 CDS
T07015
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csho
Campylobacter showae
Pathway
csho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSHOW_0508 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csho03021
]
CSHOW_0508 (rpoC)
03400 DNA repair and recombination proteins [BR:
csho03400
]
CSHOW_0508 (rpoC)
Enzymes [BR:
csho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSHOW_0508 (rpoC)
Transcription machinery [BR:
csho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CSHOW_0508 (rpoC)
DNA repair and recombination proteins [BR:
csho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CSHOW_0508 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QCD48466
LinkDB
All DBs
Position
518142..522650
Genome browser
AA seq
1502 aa
AA seq
DB search
MSELKPIEIKEERRPRDFEAFQLRLASPERIKSWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPIRDYECLCGKYKKMRYKGIKCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGIKMKDLERVLYYEAYIVESVGDAFYDTENSKKVEIFDVLNEEQYVSLASR
FEESGFRARMGGEVIRDLLANIDLVELLNTLKDEISATNSEAKKKTIVKRLKVVESFLNS
GNRPEWMMITNLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNARLKRLMELDAPEI
IIRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPKLRMDQCGLPKRMALELFKPHLLARLEEKGYATTVKQAKKMIEDKTNEVWE
CLEEVVKDHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHV
PLSQEAIAECKILMLSSMNILLPASGKAITVPSQDMVLGIYYLSLEKTDSKGANKIFASV
DEVMIAEEAHCLEVHSKIKTMIDGKTLFTTAGRLIIRSILPDFVPENMWNRVMKKKDIAN
LVDYVYKNGGLEVTAGFLDKLKNLGFRYATKAGISISIADIIVPDSKQKYINEAKKKVRE
IQNQYGAGLLTDSERYNKIIDIWTDTNNVVAGEMMKLIQGDKGGFNSIYMMADSGARGSA
AQIRQLAGMRGLMAKPDGSIIETPIISNFREGLNVLEYFNSTHGARKGLADTALKTANAG
YLTRKLIDVAQNVKVTMHDCGTHEGVEITEITDNGELIESLEERILGRVLADDVIDPIAN
EVLFSEGTLIDEEKAKAITEAGIKSVSIRTPITCKAAKGVCAKCYGVNLGEGKLVKPGEA
VGIISAQSIGEPGTQLTLRTFHIGGTASTEQQDYQVVAQKEGFIRYYNLSVYENGGKRIV
ANRRNSAVLLVEPKIKAPFDGKIEIEVAHEDVNIIVKGKKEEIKYTLRRGDLAKPNELAG
VSGKVEGKIYIPYADGDSVKENESIAEVIKEGWNVPKRIPFASEIKVEDGEPIAKKILAG
ANGVLKFYILKGDYLERLRNIKKGHVVTEKGLFVVVADEDDREAVRYYIPRNSIIKANDS
DIVDSKAVISEPESQEKTVIAEWDPYSTPIIAEAAGRVTYEDIEPGYSAAEQYDEATGQS
RLVINEYLPSGIKPTIVISTDEGKMIRYQLEPKTAIFVANDEVVKQADILAKTPKAVAKS
KDITGGLPRVSELFEARRPKNTAIIAEIDGTVRFEKPLRSKERIVIEADDGATAEYLIDK
TRQIQVRDGEFIHAGEKLTDGLISSHDVLRILGEKALHYYLISEIQQVYRSQGVAIADKH
IEIIVSQMLRQVKIVDSGDTNFITGDMISRTRFKEENERIMRMGGNPAIAEPILLGVTRA
AIGSDSVISAASFQETTKVLTEASIAAKIDHLEDLKENVILGRMIPVGTGLYQDQKIKLK
QN
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagttaaaacctattgagataaaagaagaacgcagaccgcgcgattttgaggca
tttcagcttcgtttggcaagtcccgagaggataaaatcatggagccacggcgaggtcaaa
aaacccgaaaccataaactaccgtacgctaaaacctgagcgcgacggcttattttgcgct
aaaattttcggtccgatccgcgactacgagtgcctttgcggtaagtataaaaaaatgcgc
tacaaaggcatcaagtgcgaaaagtgcggcgtcgaggtaactagctcaaaggtgcgccgt
tccagaatgggtcacatcgagctcgtgactccggttgcgcacatttggtacgtaaattcg
cttccgagccgcataggaacgctgctcggcataaagatgaaagaccttgagcgcgtactt
tactatgaggcatatatcgtcgagagtgttggcgatgcgttttatgacaccgaaaatagc
aaaaaggtcgaaattttcgacgttctaaacgaagagcaatacgtttctttagcttctcgc
tttgaagagagcggatttagagctaggatgggcggcgaagttatccgcgatttactagca
aatatcgatttggtcgagcttttaaataccctaaaagatgagatcagtgcgacaaattcg
gaagccaagaaaaaaaccatagtaaaaagactaaaagtcgttgagagctttttaaattct
ggcaaccgtcctgagtggatgatgattacgaatttaccggtccttccgccggatcttcgc
ccgcttgttagccttgacggcggtaaatttgcggtttctgacgtaaacgacctgtatcgc
cgcgttatcaacagaaacgcgcgtttaaaacgccttatggagcttgacgcgcccgaaatt
atcatcagaaacgaaaagcgtatgcttcaagagtccgtcgatgcgctatttgacaacgga
cgacgcgcgaatgctgtaaaaggcgcaaacaaacgcccgttaaaatcgctttctgaaatc
attaaaggcaagcaaggccgcttccgtcaaaatttgctcggtaagcgcgttgacttttcc
ggtcgttcggttatcgtcgttggtccaaaactacgcatggatcagtgcggattaccgaaa
agaatggcgcttgagctgtttaagccgcatttgctagctcgccttgaggagaagggttac
gctacgaccgtaaaacaagctaaaaagatgatcgaggataagactaacgaggtttgggag
tgcctagaggaggtcgttaaagatcatccggtcatgctaaaccgcgctccgacgcttcac
aaactatctatccaggcgtttcaccctgtgcttgtcgaaggcaaggctatccagctacac
ccgctagtttgtgccgcgtttaacgctgacttcgacggtgaccagatggctgttcacgtt
ccgctatctcaggaggctatagcagagtgcaaaattttgatgcttagctcaatgaatatc
ttgcttcctgcaagcggtaaggctatcacagttcctagccaggatatggttttgggaatc
tactatctaagcctagaaaagaccgacagcaagggtgcaaataaaatttttgcatccgta
gacgaagtaatgatcgccgaggaagcgcactgcctagaagtacactcgaaaatcaaaacg
atgatcgacggcaagacgctatttacgaccgcaggccgcctaatcatccgctcgattctg
cctgattttgttcctgaaaatatgtggaacagggtcatgaagaaaaaagatatcgcaaat
ttggttgattacgtttataaaaacggcggccttgaggtaacggcgggatttttggataag
ctcaaaaatttgggcttccgctatgcgacaaaagccggcatctcgatctctatcgccgat
atcatcgtgcctgatagtaaacaaaaatatatcaacgaagccaagaaaaaagtccgcgag
atacaaaatcagtacggcgcgggcttgctaacggactccgagagatacaataaaatcatc
gacatttggacagatacgaataacgtcgtcgcgggtgagatgatgaagcttatccagggg
gacaagggcgggtttaactcgatttatatgatggctgacagcggcgcgagaggttctgcg
gcgcaaattcgccagctagccggtatgcgtggtcttatggcgaagcctgacggatcgatc
atcgagacgccgatcatatcaaacttccgtgagggtctaaacgtccttgagtactttaac
tcaacccacggtgccagaaagggtctggcagataccgcgttaaaaacggcgaatgccgga
tatctaaccagaaagctaatcgacgtcgcgcaaaacgtgaaagtcactatgcacgactgc
ggcacgcacgagggtgtcgagatcaccgagatcaccgacaacggcgagcttatcgagagt
ttagaagagagaattttaggccgcgtactagccgacgacgtaatcgatccgatagcaaac
gaggtgctgtttagcgaaggtacgctgatagacgaagaaaaagccaaagcgataaccgaa
gctggtataaaatctgtcagcataagaacgccgataacttgcaaagcagcaaaaggcgtc
tgcgcgaaatgctacggcgtgaatttgggcgaaggaaagctggtaaaaccaggcgaagcc
gtcggtatcatctcggctcaatctatcggcgaacccggtactcagctaacgctaagaacc
ttccacatcggcggtacagcatcaactgagcagcaagactaccaagttgtcgcgcaaaaa
gagggctttataagatactataatctaagcgtttacgaaaatggcggcaagagaatcgta
gcaaaccgcagaaactcagccgtcttgctcgtcgagcctaagatcaaagctccgtttgac
ggaaagatcgagatcgaggttgctcacgaggacgtaaacatcatcgtaaaaggtaaaaaa
gaagagatcaaatatactctaagaagaggcgacctagctaaacctaacgagttagccggc
gttagcggtaaggtcgagggtaaaatttacatcccttatgctgacggcgactcggtcaaa
gagaacgaaagtatcgcagaggtcatcaaagagggctggaacgtaccgaagcgtatcccg
tttgcaagcgagataaaggtagaagacggcgagcctatcgctaagaaaatccttgcaggc
gcaaacggcgtgcttaaattttatatcctaaagggcgattatttagagcgcttaagaaat
atcaaaaaaggccacgttgtaaccgaaaaaggcttatttgtcgtggttgccgacgaagac
gacagagaggcggttcgctactatatcccgcgaaactctatcatcaaagcaaacgatagc
gatatcgtggatagcaaagcggtcatctcggagcctgaaagccaagagaaaactgtcata
gccgagtgggatccgtactctacgccgatcatcgccgaggctgcaggtagggtgacatac
gaggatatcgagccaggctatagcgccgccgagcagtacgacgaggcgaccggccagagc
cgtctagttatcaacgagtatctgccttcgggcatcaagcctacgatcgttatcagcacc
gatgagggcaaaatgatccgctatcagctagagccaaaaaccgcgatattcgtagccaac
gacgaagtggtaaaacaagctgatatcctggctaagacgcctaaggctgtcgcgaagtca
aaagacatcacgggcggtttgccgcgcgtatctgagctatttgaggctagacgtccaaaa
aatacggctatcatcgctgaaatcgacggcaccgtaagatttgaaaagccgcttcgctcc
aaagaacgcatcgtgatcgaggccgatgacggtgcaactgccgagtatttgatagacaaa
actcgtcaaattcaggttcgcgacggcgaatttatccacgcgggcgagaagctaaccgac
ggactaatttcaagccacgacgttttgagaattttgggtgaaaaggcgctacactattat
ttgatcagcgaaattcagcaagtttatcgctctcaaggcgttgcgatcgccgataaacac
attgagatcatcgtttctcagatgcttcgtcaggttaagattgtcgatagcggcgatacg
aatttcattaccggcgatatgatctctcgaacgagatttaaggaagaaaacgaacgtata
atgagaatgggcggtaatcctgcgatcgccgagcctattttgctaggcgttacgcgcgcc
gctatcggaagcgatagcgtgatctctgcggcatcgttccaagagacgactaaggttcta
accgaggcttctatcgcagctaagatcgaccacctcgaagatctaaaagaaaacgtcatc
ctaggacgcatgattcctgtcggaacgggtctttatcaagatcaaaagatcaagctaaaa
caaaactaa
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integrated database retrieval system
