Cronobacter malonaticus CMCC45402: P262_00715
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Entry
P262_00715 CDS
T02955
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
csi
Cronobacter malonaticus CMCC45402
Pathway
csi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P262_00715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csi03019
]
P262_00715
03016 Transfer RNA biogenesis [BR:
csi03016
]
P262_00715
Enzymes [BR:
csi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P262_00715
Messenger RNA biogenesis [BR:
csi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P262_00715
Transfer RNA biogenesis [BR:
csi03016
]
Prokaryotic type
tRNA degradation factors
P262_00715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AHB68872
UniProt:
V5TV97
LinkDB
All DBs
Position
537463..539931
Genome browser
AA seq
822 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELASELGIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLQKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDIVLAQPLGSDRKGRREARIVRVLVPKQSNIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIAHLKEEVPEEAKVGRVDLRNLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDEDLRSQYQPLVKHLEELHTLYKALEEA
RTERGGISFESEEAKFIFNAERRIDRIEQTQRNDAHKLIEECMILANISAARFVEKHKEP
ALFRIHDRPTNEAITSFRSVLAELGLELPGGNKPEPRDYAELLDSIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLIAKEQGHEGNTTESG
GWHYTMEEMLQLGQHCSMTERRADEATREVADWLKCDFMQDQVGQTFSGVISSVTGFGFF
VRLTDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERGPRNVGKTAREREKRGGGGGKNRSRRQVGKRQNFEPNEAFRSEKGRGKVKK
DGAARAEKSDKPAKSSKKPSAKTQKIAAATKAKRAAKKKRDN
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatccttttcaggaacgagaagctgagaagtacgctaaccctatcccgagc
cgggaattcatccttgagcatttaaccaaacgcgaaaaaccggctaaccgcgatgaactg
gcgtccgaactcggcattgaaggcgaggagcagctggaagcgctgcgtcgccgcctgcgc
gccatggagcgcgacggccagttagtctttacccgccgccagtgctatgcgctgccggaa
cgtcttgatctgcaaaaaggcaccgtcatcggccatcgtgacggttacgggtttttacgc
gtcgaaggacgcaaagacgatctctatctctcgtctgagcagatgaaaacctgcattcac
ggcgatatcgtcctggcgcagccgctcggttcagaccgcaaaggccgccgcgaagcgcgc
attgtgcgcgtgctggtgccgaagcagagcaatatcgtcgggcgctatttcaccgacgcg
ggcgtcggcttcgtggtgccggacgacagccgtctgagctttgatatcctcattccgccg
gaagaggtgatgggcgcgcgcatgggctatgtcgtggtcgtcgagctgacacagcgtccg
acgcgccgcaccaaagctatcggtaaaattgttgaagtgctcggcgacaacatgggcacc
ggcatggccgtggatatggcgctgcgcactcatgaaatcccttacgtctggccgaaagcc
gtcgaagaacagattgcgcacctgaaagaagaagtgccggaagaggccaaagtggggcgc
gtcgatttgcgcaacctgccgcttgtcaccattgacggcgaagatgcccgcgactttgac
gacgccgtattctgtgagaaaaaacgcggcggcggctggcgcctgtgggtggctatcgct
gacgtcagctactatgtgcgtccgccaacgccgcttgataacgaagcgcgcaaccgcggc
acgtcggtttacttcccgtcgcaggtcgtcccaatgctgccggaagtgctctccaacggc
ctgtgctcgctgaatccgcaggtagatcgcctctgtatggtctgtgagatgaccatctcc
gccaaaggccgtctcactggctataagttctatgaagcggtgatgagctcgcacgcccgt
ctgacctacaccaaggtgtggcatattctccagggcgatgaagatctgcgcagccagtat
cagccgctggtgaagcatctcgaagagctgcacacgctgtataaagcgctggaagaggcg
cgcaccgagcgcggcggcatctcgtttgaaagcgaagaagcgaagtttatcttcaacgcc
gagcgccgtatcgatcgcatcgagcagacccagcgtaacgacgcgcacaagcttatcgaa
gagtgcatgatcctcgccaatatctcagcggcgcgctttgtcgagaagcacaaagagccg
gcgttgttccgtattcacgatcgtcctacgaatgaagcgatcacctcgttccgctctgtg
ctggcggagctggggctggagctgccgggcggcaacaagccggaaccgcgcgattacgcc
gagctgctcgattccatcgccgatcgtcccgatcacgagatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatttacgatccggaaaaccgcggccactttggcctggcgctg
caatcttacgcgcactttacctcgccgattcgccgctaccctgatctcacgttgcaccgc
gcgattaaatacctgatcgccaaagagcagggccacgaaggcaacaccaccgaaagcggt
ggctggcactacaccatggaagagatgctgcaactgggccagcactgctccatgaccgaa
cgccgcgccgatgaagctacccgcgaagtggcggactggctgaagtgcgacttcatgcag
gatcaggttggccagactttctccggcgtgatttcaagcgtcaccggctttggtttcttt
gtgcgcctgaccgatctctttatcgacggcctggtgcatgtctcgtcgctggataacgac
tactaccgctttgatcaggtcggccagcgtctgattggcgaatccggcggccagacgtac
cgtctgggcgatcgcgtcgaagtcaaagtcgaagcggttaacatggacgagcgcaaaatc
gatttctcgctcatctccagcgaacgcgggccgcgtaacgtgggcaaaactgcgcgcgag
cgcgagaagcgaggcggcggtggtggtaaaaaccgcagccgtcgtcaggtcggcaagcgc
cagaatttcgaacccaacgaggcgtttcgcagcgaaaaaggccgtggaaaggtgaagaaa
gacggcgcggcgcgcgctgagaagagcgacaagccggcgaaaagcagtaaaaaaccgtcg
gccaaaacgcagaaaatcgcggccgccaccaaagcgaagcgcgcggcgaagaaaaagcgc
gacaactaa
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