Cronobacter malonaticus CMCC45402: P262_03469
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Entry
P262_03469 CDS
T02955
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
csi
Cronobacter malonaticus CMCC45402
Pathway
csi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P262_03469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csi03019
]
P262_03469
03009 Ribosome biogenesis [BR:
csi03009
]
P262_03469
Enzymes [BR:
csi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P262_03469
Messenger RNA biogenesis [BR:
csi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P262_03469
Ribosome biogenesis [BR:
csi03009
]
Prokaryotic type
rRNA processing factors
P262_03469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AHB70841
UniProt:
V5TZY8
LinkDB
All DBs
Position
2567511..2570690
Genome browser
AA seq
1059 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPANYASHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEALQWD
LSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH
IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL
REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSI
LRLIEEEALKENTQEVHAIVPVPIASYLLNEKREAITAIETRQGGVRCVIVPNDQMETPH
YSVLRVRKGEETHTLSYMLPKLHEEAMALPSEDEYAERKRPEQPALATFVMPDVPPVPQE
TATPKAETVAPKAVAKTAEPAKEGFLSRAISALKSLFASEPQAQPVASEPEQQPAKNRDE
KQQERRNGRRQNNRRDRNERGDRSERGERPSRDNRDNRENRDNSEAREENRRNRREKQQQ
NAEAREARTPVAEEATEKQKSRDDQPQSPRRERNRRRSDEKRQAQQEVSALNRDEAVEET
EQEDRVVQVMPRRKPRQLSQKVRIESAAEAEAVGTTDAPVAEPREEAAPLALPANVETPA
VAEETNQTGSENAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMAS
GKVWIRYPLPRVQEQEEQQLEQNTAPVAETQATEAPVAPVAEAVVVEPSVVEAAPQEPVV
ETTHPEAISAPVDAEPQLIEPQDQAVAEQVAQEAVPADAPVAEEAPREETAAVIAESAPE
QAPQPEAIADEPVKAAEAAPVVAPQAQEDDVKAPVVAVASASVASAPMTRAPAPEYVPEP
PRHSDWVRPAFEFSGKGSAGGHSATHQASAPATRPQPVE
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgctaattaacgcaactcagcaggaagagttgcgcgtcgccctcgtggatgggcaacgt
ctgtacgacctggatatcgaaagtcctggacacgagcagaaaaaagcgaacatctacaaa
ggcaaaatcacccgcattgaacccagtctcgaagccgcatttgtagattatggcgccgaa
agacacggtttcctccccttaaaagaaatcgcccgcgaatatttccccgcaaactacgcc
tctcatggtcgtccgaatattaaagatgtcctgcgcgaaggccaggaagtcatcgttcag
atagacaaagaagagcgtggcaacaaaggcgcagcgctgacgacgtttatcagcctcgcg
ggcagctacctcgtgctgatgccgaacaacccgcgtgcgggcggtatctctcgccgtatc
gaaggcgacgatcgcaccgagcttaaagaagcgctttcaagcctcgaactgccggatggc
atggggcttatcgtgcgcaccgcaggcgtcggtaaatccgccgaagcgctgcagtgggat
ttaagcttccgcctcaagcactgggaagccattaaaaaagccgctgaaaaccgcccggca
ccgttccttatccatcaggaaagtaacgtcatcgtgcgcgcattccgcgactatctgcgc
caggacatcggcgaaatcctgatcgataacccgaaagtccttgagctggcccgccagcac
atcgcggcactgggtcgtccggatttcagcagcaaaattaagctctacaccggtgaaatt
ccgctgttcagccactatcagatagaatcccagattgagtccgccttccagcgcgaagtg
cgtctgccgtccggcggctcgattgttatcgacaccaccgaagcgctgaccgccattgac
atcaactccgcccgcgcgacccgcggcggcgatatcgaagagacggcgtttaacaccaac
ctggaagcggcggatgaaatcgcccgccagctgcgcctgcgtgacttaggcggtcttatc
gttatcgacttcatcgatatgacgccggtacgccaccagcgcgcggtggaaaaccgtctg
cgcgaagcggtgcgtcaggatcgcgcgcgcatccagattagccatatttcccgcttcggc
ctgctggagatgtcccgccagcgcctcagcccgtcgcttggcgaatccagccatcacgtc
tgcccacgctgtagcggcaccggcactatccgcgataacgaatctctgtcgctctccatt
ctgcgtctgattgaagaagaagcgctgaaagagaacacccaggaagttcacgctatcgtt
ccggtgcctatcgcctcctatctgcttaacgagaagcgtgaagccatcaccgctatcgaa
acccgtcagggcggcgtgcgctgcgtgatcgtgccgaacgatcagatggaaaccccgcac
tactccgtactgcgcgtgcgtaaaggcgaagagacgcacaccctgagctacatgctgccg
aagctgcatgaagaagcgatggcgctgccgtctgaagacgaatacgccgagcgtaaacgt
ccggagcagcctgctcttgccacattcgtgatgccggacgtgccgcctgtgccgcaggaa
accgcgacgccgaaagccgaaaccgtggcaccgaaagcagtcgccaaaaccgcagagcct
gcgaaagaaggcttcctgagccgcgccatcagcgcgctgaagagcctgttcgccagcgag
ccgcaggcacagcctgtcgcgagcgagccggaacagcagcctgcgaaaaaccgtgacgag
aagcagcaggagcgccgtaacggccgtcgtcagaacaaccgtcgcgaccgtaacgaacgt
ggcgaccgcagcgaacgcggtgagcgtccgtcccgtgataatcgcgacaatcgcgagaat
cgtgacaacagcgaagcgcgcgaagagaaccgccgtaaccgccgcgagaagcagcagcag
aacgccgaagcgcgtgaagcccgcacaccagtcgctgaagaagccactgaaaaacagaaa
tcccgtgacgatcagccgcagtctccgcgccgcgaacgtaaccgccgtcgctctgatgag
aaacgtcaggcgcagcaggaagtcagcgcgctgaaccgtgatgaggctgtggaagagacg
gaacaggaagatcgcgttgttcaggtgatgccgcgtcgcaaaccgcgccagctgagccag
aaagtgcgtatcgaatccgcagcggaagcagaagctgtcggcaccaccgacgcgccggtt
gctgaaccgcgtgaagaagccgcaccgctggcgctgccagccaacgtggaaacacctgcc
gtcgctgaagagaccaaccagacgggcagcgaaaatgccggtatgccgcgtcgctcccgc
cgttctccgcgtcacctgcgcgtcagcggccagcgccgccgtcgttaccgtgacgagcgt
tacccgacccagtcgccgatgccgctgaccgtcgcgtgcgcgtctccggaaatggcgtcc
ggtaaagtctggatccgctacccgctgccgcgtgtgcaggagcaggaagagcagcagctg
gagcagaacaccgcgccggtggctgaaacccaggcgaccgaagcaccggttgcgccggtc
gctgaagccgtagtggtcgaaccgtctgtggtggaagctgcgccgcaggagccggtggtt
gaaaccacgcatcctgaagcgatttccgcgccggttgacgctgagccgcagcttatcgag
ccgcaggatcaggccgtcgctgagcaggtcgcacaggaagccgttccggctgacgccccg
gtcgctgaagaagcgcctcgtgaagagaccgctgctgtcatcgcagaaagcgcgcctgag
caggcacctcagccggaagcgatcgcggatgagccggtgaaagctgcggaagccgcgccg
gtggtagcaccgcaagcgcaggaagacgacgtgaaagcgccggtcgtggctgttgcgtcc
gcaagcgtcgcctcagcaccaatgacccgcgcaccggcaccggaatatgtcccggagccg
ccgcgtcacagcgactgggttcgcccggcgttcgagttcagcggtaaaggttcggcgggc
ggccacagcgccacccaccaggcctcggcaccagccacacgtcctcagccggtggagtaa
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integrated database retrieval system
